BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0570200 Os09g0570200|AK102035
         (543 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25610.1  | chr4:13063801-13066860 FORWARD LENGTH=587          271   8e-73

>AT4G25610.1 | chr4:13063801-13066860 FORWARD LENGTH=587
          Length = 586

 Score =  271 bits (692), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 280/542 (51%), Gaps = 56/542 (10%)

Query: 13  PGWPLFSPPKLQLQKCTKCPREFCSSINYRRHTRVHRRTLQIEKDFLKNRDNIAAFWDKL 72
           PGWPL +P K+Q+QKC KC REFCS +N+RRH R+HRR  + EKDF K RD + AFW+KL
Sbjct: 48  PGWPLLTPLKIQMQKCEKCSREFCSPVNFRRHNRMHRRQRKPEKDFGKERDALGAFWNKL 107

Query: 73  TLDQAKTILSLADVDIEGVTGPSILAALSTWMCKPGYASLPLPYARAGNQLLDLIETTAS 132
           +   AK ILS+  + +E + G S+ + L + + KPGY +LP  Y RAG+ LLDL++    
Sbjct: 108 SATDAKEILSVKSMMLEDIPGASVESGLMSLIEKPGYTALPQYYLRAGSGLLDLLQARPP 167

Query: 133 RLPVSSNELFSMLDEASENTFLSTNPTACIQKFIFNGEADKVAPELKNAVACTSYMLEQT 192
           RLP+SS ELFS+LD+ASE TFLS+   A +QK+IF+GE  K   E KN VAC S++LEQ 
Sbjct: 168 RLPISSQELFSILDDASEKTFLSSE-AAPMQKYIFDGEIGKTVLEAKNVVACASFLLEQR 226

Query: 193 LVEAWSADKAAEALRCQKLLVXXXXXXXXXXXXLIERKRMKKLRQKEQRLKDLKDEDVTD 252
           L++AW ADK AEALRCQ LLV            L+ERK+ KKLRQKEQR KD K +    
Sbjct: 227 LIKAWLADKDAEALRCQNLLVEEEEAARRRKAELLERKKRKKLRQKEQREKDQKKD---- 282

Query: 253 RFPGSVDGTTDSSGILSLKEATSDPGLYEQEDTQLPTPVASEDNSSFADLPVEHDIHDPG 312
                 D +T S       E +S   +    + Q P  +  +D+SS  +  V    +   
Sbjct: 283 ---AKEDESTTSEEQQYPAEPSSPLSVASDSEAQTPDSLPIDDSSSLEEPQVLETNNGRN 339

Query: 313 HEVN-PSVTL--NQQVFSRHRVGRTENFAQNSFASGGSAIGSKHPASVRHSHYRGANAGA 369
            E   P V    N Q   R    R    +Q    +G  A  + +   +R +   G N  A
Sbjct: 340 SETQVPMVDGLDNGQNMERRSGRRQMQRSQQGMPNGFHADHAPNLGGMRKN---GTNRDA 396

Query: 370 VSNRNKTWTWKVRTE--IEEHSPKDELNIDDGQEIVLNKKSRVLIGSISVAIEDGSE--- 424
            +N  K W+ K      I +H+   + +          K S  ++GS+SV+I +  E   
Sbjct: 397 RANTTKVWSRKSDNPKLISQHAAVTQQD--------QTKSSEFIVGSLSVSIRNSGEHNQ 448

Query: 425 --CLEDNQYSKEYPT-PASQLNIGNHPVTKVMQPF-NHGEEGNGYNAHNDVEVSITPTAQ 480
             C E  + +K     PAS+         K+ +P  + G + +  N + D E        
Sbjct: 449 TKCSEGERRTKTVEVKPASE-----QSTVKIWRPVSSQGRKTSTVNGNTDKE-------- 495

Query: 481 DHSSSGVMTDGNNCSSCCNXXXXXXXXXXXXIFSSKEAAAFLSQRWKEAINADHVKLVLC 540
           D  S+    +  N                   F++ EA AFL++RWKEA +A+HV LVL 
Sbjct: 496 DKRSNPTTPEVKNAHHIS------------LQFNNHEAKAFLAKRWKEATSAEHVTLVLS 543

Query: 541 PE 542
            E
Sbjct: 544 QE 545



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,918,569
Number of extensions: 503597
Number of successful extensions: 1116
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 440
Effective length of database: 8,282,721
Effective search space: 3644397240
Effective search space used: 3644397240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)