BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0570200 Os09g0570200|AK102035
(543 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0570200 Zinc finger, C2H2-type domain containing protein 1051 0.0
>Os09g0570200 Zinc finger, C2H2-type domain containing protein
Length = 543
Score = 1051 bits (2719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/543 (95%), Positives = 519/543 (95%)
Query: 1 MPNVRSSPVADLPGWPLFSPPKLQLQKCTKCPREFCSSINYRRHTRVHRRTLQIEKDFLK 60
MPNVRSSPVADLPGWPLFSPPKLQLQKCTKCPREFCSSINYRRHTRVHRRTLQIEKDFLK
Sbjct: 1 MPNVRSSPVADLPGWPLFSPPKLQLQKCTKCPREFCSSINYRRHTRVHRRTLQIEKDFLK 60
Query: 61 NRDNIAAFWDKLTLDQAKTILSLADVDIEGVTGPSILAALSTWMCKPGYASLPLPYARAG 120
NRDNIAAFWDKLTLDQAKTILSLADVDIEGVTGPSILAALSTWMCKPGYASLPLPYARAG
Sbjct: 61 NRDNIAAFWDKLTLDQAKTILSLADVDIEGVTGPSILAALSTWMCKPGYASLPLPYARAG 120
Query: 121 NQLLDLIETTASRLPVSSNELFSMLDEASENTFLSTNPTACIQKFIFNGEADKVAPELKN 180
NQLLDLIETTASRLPVSSNELFSMLDEASENTFLSTNPTACIQKFIFNGEADKVAPELKN
Sbjct: 121 NQLLDLIETTASRLPVSSNELFSMLDEASENTFLSTNPTACIQKFIFNGEADKVAPELKN 180
Query: 181 AVACTSYMLEQTLVEAWSADKAAEALRCQKLLVXXXXXXXXXXXXLIERKRMKKLRQKEQ 240
AVACTSYMLEQTLVEAWSADKAAEALRCQKLLV LIERKRMKKLRQKEQ
Sbjct: 181 AVACTSYMLEQTLVEAWSADKAAEALRCQKLLVEEEEAAQKRQAELIERKRMKKLRQKEQ 240
Query: 241 RLKDLKDEDVTDRFPGSVDGTTDSSGILSLKEATSDPGLYEQEDTQLPTPVASEDNSSFA 300
RLKDLKDEDVTDRFPGSVDGTTDSSGILSLKEATSDPGLYEQEDTQLPTPVASEDNSSFA
Sbjct: 241 RLKDLKDEDVTDRFPGSVDGTTDSSGILSLKEATSDPGLYEQEDTQLPTPVASEDNSSFA 300
Query: 301 DLPVEHDIHDPGHEVNPSVTLNQQVFSRHRVGRTENFAQNSFASGGSAIGSKHPASVRHS 360
DLPVEHDIHDPGHEVNPSVTLNQQVFSRHRVGRTENFAQNSFASGGSAIGSKHPASVRHS
Sbjct: 301 DLPVEHDIHDPGHEVNPSVTLNQQVFSRHRVGRTENFAQNSFASGGSAIGSKHPASVRHS 360
Query: 361 HYRGANAGAVSNRNKTWTWKVRTEIEEHSPKDELNIDDGQEIVLNKKSRVLIGSISVAIE 420
HYRGANAGAVSNRNKTWTWKVRTEIEEHSPKDELNIDDGQEIVLNKKSRVLIGSISVAIE
Sbjct: 361 HYRGANAGAVSNRNKTWTWKVRTEIEEHSPKDELNIDDGQEIVLNKKSRVLIGSISVAIE 420
Query: 421 DGSECLEDNQYSKEYPTPASQLNIGNHPVTKVMQPFNHGEEGNGYNAHNDVEVSITPTAQ 480
DGSECLEDNQYSKEYPTPASQLNIGNHPVTKVMQPFNHGEEGNGYNAHNDVEVSITPTAQ
Sbjct: 421 DGSECLEDNQYSKEYPTPASQLNIGNHPVTKVMQPFNHGEEGNGYNAHNDVEVSITPTAQ 480
Query: 481 DHSSSGVMTDGNNCSSCCNXXXXXXXXXXXXIFSSKEAAAFLSQRWKEAINADHVKLVLC 540
DHSSSGVMTDGNNCSSCCN IFSSKEAAAFLSQRWKEAINADHVKLVLC
Sbjct: 481 DHSSSGVMTDGNNCSSCCNAGLAEGGGLRGAIFSSKEAAAFLSQRWKEAINADHVKLVLC 540
Query: 541 PEG 543
PEG
Sbjct: 541 PEG 543
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,787,586
Number of extensions: 780342
Number of successful extensions: 1497
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1497
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 437
Effective length of database: 11,501,117
Effective search space: 5025988129
Effective search space used: 5025988129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)