FiT-DB / Search/ Help/ Sample detail

Os09g0569300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calmodulin-binding heat-shock protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.0311) R2 : 0.183
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.23 (0.0755) R2dC : 0.0897 R2C : 0.135
β3 : -1.17 (0.0928) R2dE : 0.0568 R2E : 0.0684
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.107 (0.0709) R2dN8 : 0.0278 R2N8 : -0.0125
σ : 0.521
deviance : 123.86
__
_____
C
peak time of C : 14.9
E
wheather : temperature
threshold : 21
memory length : 8890
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.45 0.466 5.97 1.51 0.757 -1.17 -1.64 3.79 0.468 15.3 20.6 3167 -- --
109.98 0.488 6.05 0.786 0.686 -1.23 -1.87 -- 0.448 15 17.9 10978 -- --
107.03 0.482 5.97 1.52 0.751 -1.17 -- 3.93 0.466 15.4 20.77 3145 -- --
118.33 0.507 6.06 0.724 0.752 -1.26 -- -- 0.393 15.4 16.6 10764 -- --
134.16 0.539 5.97 1.46 -- -1.28 -- 3.61 0.485 -- 19.85 2582 -- --
137.63 0.55 6.16 -0.0187 0.8 -- -1.64 -- -0.0593 15.1 -- -- -- --
146.53 0.567 6.17 -0.0538 0.796 -- -- -- -0.0688 15.2 -- -- -- --
149.13 0.569 6.07 0.668 -- -1.26 -- -- 0.355 -- 16.65 9807 -- --
123.86 0.521 6.13 -- 1.23 -1.17 -- -- 0.107 14.9 21 8890 -- --
182.53 0.631 6.17 -0.0877 -- -- -- -- -0.0897 -- -- -- -- --
146.61 0.566 6.17 -- 0.797 -- -- -- -0.0629 15.2 -- -- -- --
155.8 0.581 6.1 -- -- -0.836 -- -- 0.208 -- 21.8 9791 -- --
182.74 0.631 6.17 -- -- -- -- -- -0.08 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.71 radiation 40 14400 < th dose independent rect. 22 10
4 87.88 humidity 80 43200 > th dose dependent rect. 3 12
5 87.98 humidity 80 43200 > th dose dependent rect. 2 17
8 88.04 radiation 40 14400 < th dose independent rect. 2 6
10 88.10 humidity 80 43200 > th dose dependent sin 3 NA
16 88.31 humidity 80 43200 > th dose dependent rect. 2 21
27 88.63 radiation 40 14400 < th dose independent rect. 7 1
62 89.78 humidity 90 43200 < th dose independent rect. 4 23
67 89.85 humidity 90 43200 < th dose independent rect. 2 23
70 89.87 humidity 90 43200 < th dose independent rect. 17 23
72 89.88 humidity 90 43200 < th dose independent rect. 22 23
78 89.91 humidity 90 43200 < th dose independent rect. 24 23
79 89.92 humidity 90 43200 < th dose independent sin 4 NA
83 89.94 humidity 90 43200 < th dose independent no NA NA
87 89.96 humidity 90 43200 > th dose independent rect. 19 21
99 89.99 humidity 90 43200 < th dose independent rect. 14 23
106 90.02 humidity 90 43200 > th dose independent sin 5 NA
114 90.04 humidity 90 43200 > th dose independent rect. 22 19
115 90.04 humidity 90 43200 > th dose independent rect. 3 23
116 90.04 humidity 90 43200 > th dose independent rect. 5 23
129 90.08 humidity 90 43200 < th dose independent rect. 9 23
140 90.11 humidity 90 43200 < th dose independent rect. 7 23
145 90.12 humidity 90 43200 > th dose independent rect. 22 23
146 90.12 humidity 90 43200 > th dose independent rect. 24 23
147 90.13 humidity 90 43200 > th dose independent rect. 24 17
161 90.16 humidity 90 43200 > th dose independent no NA NA
177 90.19 humidity 90 43200 > th dose independent rect. 14 23
208 90.26 humidity 90 43200 > th dose independent rect. 9 23
223 90.32 humidity 90 43200 > th dose independent rect. 11 23
239 90.38 temperature 15 43200 < th dose independent rect. 23 9
245 90.39 temperature 15 43200 > th dose independent rect. 1 1
262 90.43 temperature 15 43200 < th dose independent rect. 3 1
269 90.45 humidity 90 43200 < th dose independent rect. 2 13
273 90.47 temperature 15 43200 > th dose independent rect. 3 1
274 90.47 temperature 15 43200 < th dose independent rect. 1 1
290 90.51 humidity 90 43200 < th dose independent rect. 2 11
295 90.52 temperature 15 43200 < th dose independent rect. 23 5
324 90.61 temperature 15 43200 < th dose dependent rect. 2 6
332 90.63 humidity 80 43200 > th dose dependent sin 18 NA
339 90.65 humidity 90 43200 > th dose dependent rect. 5 2
342 90.66 temperature 15 43200 < th dose independent rect. 23 16
370 90.72 temperature 15 43200 < th dose independent sin 8 NA
371 90.72 temperature 15 43200 < th dose independent rect. 5 2
379 90.72 temperature 15 43200 < th dose dependent rect. 2 1
382 90.73 temperature 15 43200 > th dose independent rect. 23 5
397 90.75 temperature 15 43200 > th dose independent rect. 22 11
405 90.75 humidity 90 43200 > th dose dependent rect. 4 4
446 90.81 temperature 15 43200 > th dose independent rect. 23 18
475 90.85 humidity 90 43200 > th dose independent rect. 3 8
572 90.93 temperature 15 43200 > th dose independent rect. 12 19
580 90.94 temperature 15 43200 > th dose independent sin 10 NA
587 90.94 temperature 15 43200 > th dose independent rect. 16 16
698 91.01 temperature 15 43200 < th dose dependent sin 6 NA
809 91.08 humidity 80 43200 < th dose independent rect. 12 2
825 91.09 humidity 80 43200 > th dose independent rect. 12 2
843 91.10 humidity 90 43200 < th dose independent rect. 3 8
887 91.12 temperature 15 43200 < th dose dependent rect. 12 18
945 91.15 temperature 15 43200 < th dose dependent rect. 17 14
949 91.16 temperature 15 43200 > th dose independent no NA NA