Os09g0560900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os09g0560900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.53 | 0.237 | 11.7 | 0.56 | 0.206 | -0.51 | -0.748 | 0.574 | 0.237 | 8.42 | 1.079e-05 | 5093 | -- | -- |
| 25.81 | 0.237 | 11.7 | 0.583 | 0.204 | -0.478 | -0.74 | -- | 0.236 | 8.39 | 0.1542 | 5090 | -- | -- |
| 27.23 | 0.243 | 11.7 | 0.547 | 0.213 | -0.501 | -- | 0.515 | 0.239 | 7.8 | 0.01046 | 5124 | -- | -- |
| 27.46 | 0.244 | 11.7 | 0.566 | 0.214 | -0.474 | -- | -- | 0.24 | 7.76 | 0.2459 | 5128 | -- | -- |
| 29.7 | 0.254 | 11.7 | 0.54 | -- | -0.501 | -- | 0.552 | 0.242 | -- | 1.343e-05 | 5143 | -- | -- |
| 28.68 | 0.251 | 11.7 | 0.511 | 0.206 | -- | -0.746 | -- | 0.288 | 8.25 | -- | -- | -- | -- |
| 30.34 | 0.258 | 11.7 | 0.488 | 0.212 | -- | -- | -- | 0.288 | 7.72 | -- | -- | -- | -- |
| 29.94 | 0.255 | 11.7 | 0.568 | -- | -0.468 | -- | -- | 0.245 | -- | 0.3265 | 5129 | -- | -- |
| 33.44 | 0.269 | 11.7 | -- | 0.233 | -0.347 | -- | -- | 0.15 | 7.62 | 0.3654 | 12219 | -- | -- |
| 32.76 | 0.267 | 11.7 | 0.491 | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
| 36.62 | 0.283 | 11.7 | -- | 0.215 | -- | -- | -- | 0.233 | 7.56 | -- | -- | -- | -- |
| 35.89 | 0.279 | 11.7 | -- | -- | -0.331 | -- | -- | 0.162 | -- | 0.4769 | 12219 | -- | -- |
| 39.11 | 0.292 | 11.7 | -- | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.09 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 2 | 24.14 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 3 | 24.15 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 4 | 24.15 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 5 | 24.15 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 6 | 24.16 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 7 | 24.17 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 10 | 24.19 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 16 | 24.25 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 17 | 24.27 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 31 | 24.46 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 34 | 24.46 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 39 | 24.48 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 40 | 24.48 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 43 | 24.49 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 49 | 24.49 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 60 | 24.53 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 63 | 24.55 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 65 | 24.55 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 70 | 24.57 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 72 | 24.58 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 74 | 24.58 | humidity | 90.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 78 | 24.58 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 82 | 24.59 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 83 | 24.59 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 91 | 24.61 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 107 | 24.65 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 114 | 24.67 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 120 | 24.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 122 | 24.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 130 | 24.69 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 15 | 7 |
| 133 | 24.70 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 6 | 14 |
| 143 | 24.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 145 | 24.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 184 | 24.80 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 218 | 24.85 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 246 | 24.88 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 251 | 24.89 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 255 | 24.89 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 285 | 24.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 305 | 24.93 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 313 | 24.94 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 327 | 24.95 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 365 | 24.98 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 366 | 24.98 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 380 | 24.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 405 | 25.01 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 406 | 25.01 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 410 | 25.01 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 420 | 25.02 | wind | 1.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 424 | 25.02 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 452 | 25.04 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 482 | 25.06 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 485 | 25.06 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 9 | 13 |
| 491 | 25.06 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 504 | 25.07 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 506 | 25.07 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 533 | 25.08 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 591 | 25.11 | wind | 1.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 667 | 25.15 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 671 | 25.15 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 677 | 25.15 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 9 | 14 |
| 703 | 25.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 704 | 25.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 715 | 25.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 716 | 25.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 824 | 25.20 | temperature | 30.0 | 720 | < th | dose dependent | sin | 5 | NA |
| 863 | 25.22 | humidity | 90.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 892 | 25.23 | temperature | 20.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 906 | 25.23 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 919 | 25.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 948 | 25.24 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 994 | 25.26 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 11 |