BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0560900 Os09g0560900|AK067997
         (355 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30970.1  | chr1:11040613-11043593 REVERSE LENGTH=368          266   9e-72

>AT1G30970.1 | chr1:11040613-11043593 REVERSE LENGTH=368
          Length = 367

 Score =  266 bits (681), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 183/368 (49%), Positives = 204/368 (55%), Gaps = 64/368 (17%)

Query: 1   MGKKKKR-VEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHK 59
           MGKKKKR  EKV+CYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTA GM IHVLQVHK
Sbjct: 1   MGKKKKRATEKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMVIHVLQVHK 60

Query: 60  ESVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEED-PSSKVAKVEVPSLRPP--- 115
           E+VTKVPNAK  R+ST+IEI+GMQGIPP VL AHYGEEED P +KVAKVE+PS   P   
Sbjct: 61  ENVTKVPNAKDGRDSTDIEIYGMQGIPPHVLTAHYGEEEDEPPAKVAKVEIPSA--PLGG 118

Query: 116 VMPNPAGMVYPP---------RPAYGVAPPMYNPALNXXXXXXXXXXXXXXXXXXXXXVV 166
           V+P P GMVYPP         RP Y   PPM +PA                        +
Sbjct: 119 VVPRPYGMVYPPQQVPGAVPARPMYYPGPPMRHPA-----PVWQMPPPRPQQWYPQNPAL 173

Query: 167 SVPQMAS-GLAPQQPLFPIQNM-------------PAPMTSAPANLLQTSFPMAHXXXXX 212
           SVP  A  G  PQ PLFP+QNM             P+P+T      + TS P        
Sbjct: 174 SVPPAAHLGYRPQ-PLFPVQNMGMTPTPTSAPAIQPSPVTGVTPPGIPTSSP-------- 224

Query: 213 XXXXXXXXXLFPV------------STSAGNGAVSSPYVASVAPGSIPTSSPSVAPAGVG 260
                    LFPV            S     G    P  A    GS     P+ +  G  
Sbjct: 225 --AMPVPQPLFPVVNNSIPSQAPPFSAPLPVGGAQQPSHADAL-GSADAYPPNNSIPGGT 281

Query: 261 YA---ATNQGTGGXXXXXXXXXXXXXXXTQPGANEVYLVWDDEAMSMEERRLSLPKYQVH 317
            A   A+   T G                QP  NEVYLVWDDEAMSMEERR+SLPKY+VH
Sbjct: 282 NAHSYASGPNTSGPSIGPPPVIANKAPSNQP--NEVYLVWDDEAMSMEERRMSLPKYKVH 339

Query: 318 DETSQVSS 325
           DETSQ++S
Sbjct: 340 DETSQMNS 347



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,337,894
Number of extensions: 292300
Number of successful extensions: 1561
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1553
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,364,969
Effective search space: 2133067095
Effective search space used: 2133067095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)