BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0560900 Os09g0560900|AK067997
         (355 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0560900  Zinc finger, BED-type predicted domain contain...   609   e-174

>Os09g0560900 Zinc finger, BED-type predicted domain containing protein
          Length = 355

 Score =  609 bits (1570), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 305/355 (85%), Positives = 305/355 (85%)

Query: 1   MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKE 60
           MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKE
Sbjct: 1   MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKE 60

Query: 61  SVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNP 120
           SVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNP
Sbjct: 61  SVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNP 120

Query: 121 AGMVYPPRPAYGVAPPMYNPALNXXXXXXXXXXXXXXXXXXXXXVVSVPQMASGLAPQQP 180
           AGMVYPPRPAYGVAPPMYNPALN                     VVSVPQMASGLAPQQP
Sbjct: 121 AGMVYPPRPAYGVAPPMYNPALNPLMARPPIWPAPPPQPWFTQPVVSVPQMASGLAPQQP 180

Query: 181 LFPIQNMPAPMTSAPANLLQTSFPMAHXXXXXXXXXXXXXXLFPVSTSAGNGAVSSPYVA 240
           LFPIQNMPAPMTSAPANLLQTSFPMAH              LFPVSTSAGNGAVSSPYVA
Sbjct: 181 LFPIQNMPAPMTSAPANLLQTSFPMAHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVA 240

Query: 241 SVAPGSIPTSSPSVAPAGVGYAATNQGTGGXXXXXXXXXXXXXXXTQPGANEVYLVWDDE 300
           SVAPGSIPTSSPSVAPAGVGYAATNQGTGG               TQPGANEVYLVWDDE
Sbjct: 241 SVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPASNNKAPATQPGANEVYLVWDDE 300

Query: 301 AMSMEERRLSLPKYQVHDETSQVSSDFYNFISVILMICEKNQVEVHGDALNWNIV 355
           AMSMEERRLSLPKYQVHDETSQVSSDFYNFISVILMICEKNQVEVHGDALNWNIV
Sbjct: 301 AMSMEERRLSLPKYQVHDETSQVSSDFYNFISVILMICEKNQVEVHGDALNWNIV 355



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,167,169
Number of extensions: 514758
Number of successful extensions: 2862
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2860
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 253
Effective length of database: 11,709,973
Effective search space: 2962623169
Effective search space used: 2962623169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)