Os09g0544900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glucose/ribitol dehydrogenase family protein.
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Os09g0544900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glucose/ribitol dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.11 | 0.24 | 12 | 0.407 | 0.756 | -0.326 | 0.244 | -0.271 | 0.321 | 2.99 | 69.03 | 1559 | -- | -- |
| 26.23 | 0.239 | 12 | 0.434 | 0.744 | -0.339 | 0.268 | -- | 0.334 | 2.97 | 69 | 1587 | -- | -- |
| 26.27 | 0.239 | 12 | 0.404 | 0.751 | -0.326 | -- | -0.321 | 0.315 | 2.96 | 69.87 | 1590 | -- | -- |
| 26.47 | 0.24 | 12 | 0.433 | 0.745 | -0.338 | -- | -- | 0.329 | 2.98 | 69.04 | 1587 | -- | -- |
| 34.23 | 0.272 | 12 | 0.411 | -- | -0.585 | -- | -0.345 | 0.32 | -- | 74.83 | 148 | -- | -- |
| 29.98 | 0.257 | 12 | 0.373 | 0.775 | -- | 0.183 | -- | 0.305 | 2.98 | -- | -- | -- | -- |
| 30.1 | 0.257 | 12 | 0.369 | 0.776 | -- | -- | -- | 0.304 | 2.97 | -- | -- | -- | -- |
| 34.73 | 0.274 | 12 | 0.42 | -- | -0.592 | -- | -- | 0.328 | -- | 74.53 | 164 | -- | -- |
| 28.7 | 0.25 | 12 | -- | 0.761 | -0.41 | -- | -- | 0.338 | 3.07 | 72 | 23215 | -- | -- |
| 64.69 | 0.376 | 12 | 0.402 | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
| 33.68 | 0.271 | 12 | -- | 0.783 | -- | -- | -- | 0.263 | 2.97 | -- | -- | -- | -- |
| 39.39 | 0.292 | 12 | -- | -- | -0.586 | -- | -- | 0.281 | -- | 74.66 | 159 | -- | -- |
| 68.95 | 0.388 | 12 | -- | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.93 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 2 | 24.93 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 17 |
| 3 | 24.98 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 4 | 25.02 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 5 | 25.07 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 6 | 25.09 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 9 | 25.09 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 17 |
| 10 | 25.12 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 12 | 25.13 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 14 | 25.16 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 18 | 25.18 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 34 | 25.23 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 8 |
| 40 | 25.25 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 48 | 25.26 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 57 | 25.28 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 64 | 25.28 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 68 | 25.28 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 83 | 25.30 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 129 | 25.35 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 139 | 25.35 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 143 | 25.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 160 | 25.37 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 189 | 25.38 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 199 | 25.39 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 216 | 25.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 227 | 25.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 231 | 25.42 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 247 | 25.43 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 272 | 25.44 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 12 |
| 273 | 25.44 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 306 | 25.45 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 326 | 25.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 327 | 25.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 332 | 25.46 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 336 | 25.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 347 | 25.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 352 | 25.47 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 359 | 25.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 368 | 25.47 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 386 | 25.48 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 388 | 25.48 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 401 | 25.48 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 426 | 25.49 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 488 | 25.51 | humidity | 90.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 509 | 25.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 525 | 25.52 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 527 | 25.52 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 533 | 25.52 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 1 | NA |
| 561 | 25.53 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 601 | 25.54 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 633 | 25.54 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 8 | 18 |
| 637 | 25.55 | humidity | 80.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 639 | 25.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 648 | 25.55 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 653 | 25.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 690 | 25.55 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 16 |
| 700 | 25.56 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 703 | 25.56 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 717 | 25.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 758 | 25.57 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 803 | 25.58 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 806 | 25.58 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 808 | 25.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 821 | 25.58 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 11 |
| 843 | 25.58 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 21 |
| 852 | 25.59 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 857 | 25.59 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 873 | 25.59 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 916 | 25.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 930 | 25.60 | humidity | 90.0 | 270 | > th | dose independent | rect. | 4 | 17 |
| 949 | 25.60 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |