BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0544900 Os09g0544900|AK071684
(315 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0544900 Glucose/ribitol dehydrogenase family protein 649 0.0
AK110362 186 1e-47
AK111157 184 9e-47
AK110225 169 2e-42
>Os09g0544900 Glucose/ribitol dehydrogenase family protein
Length = 315
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MAARSGPPAAAVDPEAVLSHSFPEVSFAYDERDVALYALGVGACGADAIDEKELHLVYHR 60
MAARSGPPAAAVDPEAVLSHSFPEVSFAYDERDVALYALGVGACGADAIDEKELHLVYHR
Sbjct: 1 MAARSGPPAAAVDPEAVLSHSFPEVSFAYDERDVALYALGVGACGADAIDEKELHLVYHR 60
Query: 61 DGQPHIKALPTFASLFPFKNSNGLGIVDVPGLNFDASLLLHGQHYIEIYKPIHSRANVVN 120
DGQPHIKALPTFASLFPFKNSNGLGIVDVPGLNFDASLLLHGQHYIEIYKPIHSRANVVN
Sbjct: 61 DGQPHIKALPTFASLFPFKNSNGLGIVDVPGLNFDASLLLHGQHYIEIYKPIHSRANVVN 120
Query: 121 KTKIAGLHDKGKATILEIETTTHVKDSGEVLCMNRSTIYLRGAGGFSDPSRPYSYASYPT 180
KTKIAGLHDKGKATILEIETTTHVKDSGEVLCMNRSTIYLRGAGGFSDPSRPYSYASYPT
Sbjct: 121 KTKIAGLHDKGKATILEIETTTHVKDSGEVLCMNRSTIYLRGAGGFSDPSRPYSYASYPT 180
Query: 181 NQVSRISIPNSAPSAVYEDQTQQSQALLYRLSGDYNPLHSDPMVAQVAGFTRPILHGLSS 240
NQVSRISIPNSAPSAVYEDQTQQSQALLYRLSGDYNPLHSDPMVAQVAGFTRPILHGLSS
Sbjct: 181 NQVSRISIPNSAPSAVYEDQTQQSQALLYRLSGDYNPLHSDPMVAQVAGFTRPILHGLSS 240
Query: 241 LGFAIRAVIKSFCNGDPTAVKSIFGRFLLHVYPGETLVTEMWLQGQRVLYQTKVKERNRA 300
LGFAIRAVIKSFCNGDPTAVKSIFGRFLLHVYPGETLVTEMWLQGQRVLYQTKVKERNRA
Sbjct: 241 LGFAIRAVIKSFCNGDPTAVKSIFGRFLLHVYPGETLVTEMWLQGQRVLYQTKVKERNRA 300
Query: 301 VLSGYVLLKHIPSSL 315
VLSGYVLLKHIPSSL
Sbjct: 301 VLSGYVLLKHIPSSL 315
>AK110362
Length = 904
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 154/279 (55%), Gaps = 21/279 (7%)
Query: 27 FAYDERDVALYALGVGACGADAIDEKELHLVYHRDGQPHIKALPTFASLFPFKNSNGLGI 86
F Y ERDV LY LG+GA D L VY +G + + +PTF + PF
Sbjct: 632 FEYTERDVILYNLGIGAKRTD------LPFVY--EGHENFQVIPTFGVIPPFNADPPFSF 683
Query: 87 VD-VPGLNFDASLLLHGQHYIEIYK-PIHSRANVVNKTKIAGLHDKGKATILEIETTTHV 144
D VP NFD +LLHG+ Y+EI K PI + A ++ K+ + DKG A ++ + T
Sbjct: 684 SDIVP--NFDPRMLLHGEQYLEIRKFPIPTEAKLIAVPKLVEVVDKGAAGLVVYGSVTKD 741
Query: 145 KDSGEVLCMNRSTIYLRGAGGFSDPSRPYSYASYPTNQVSRISIPNSAPSAVYEDQTQQS 204
SGE + N ST+++RG+G F PS+ + P AP AV E++T +
Sbjct: 742 AKSGEEIFYNESTVFIRGSGNFGGPSKGTDRGAATKAH----KPPQRAPDAVVEERTTEE 797
Query: 205 QALLYRLSGDYNPLHSDPMVAQVAGFTRPILHGLSSLGFAIRAVIKSFCNGDPTAVKSIF 264
QA LYRLSGD NPLH DP ++V GF PILHGL S G + + V++++ K+I
Sbjct: 798 QAALYRLSGDLNPLHIDPAFSKVGGFPTPILHGLCSFGISGKHVLQTYG-----PFKNIK 852
Query: 265 GRFLLHVYPGETLVTEMWLQGQRVLYQTKVKERNRAVLS 303
RF V PG+TLVTEMW G V +QTKVKE + +S
Sbjct: 853 VRFAGVVLPGQTLVTEMWKTGNTVAFQTKVKETGKLAIS 891
>AK111157
Length = 911
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 165/306 (53%), Gaps = 49/306 (16%)
Query: 13 DPEAVLS---HSFPEVSFAYDERDVALYALGVGACGADAIDEKELHLVYHRDGQPHIKAL 69
DPE V + F+Y ERDV LY LGVGA EK+L LV+ +D +A+
Sbjct: 629 DPEIVQKAKKEPIEDSEFSYGERDVILYNLGVGAT------EKDLDLVFEQDDD--FRAV 680
Query: 70 PTFASLFPFKNSNGLGIVDVPGLNFDASLLLHGQHYIEIYKPIHSRANVVNKTKIAGLHD 129
PTF + F S G+ + +P NF +LLHG+ Y+ I KPI + A +VNK K+ + D
Sbjct: 681 PTFGVIPQFMASGGIPLDWLP--NFSPMMLLHGEQYLAIKKPIPTSATLVNKPKLMEVLD 738
Query: 130 KGKATILEIETTTHV-KDSGEVLCMNRSTIYLRGA------------GGFSDPSRPYSYA 176
KGKA + + H K SG+++ ++ST+++RG+ G S ++P
Sbjct: 739 KGKAA--AVTSVVHTFKGSGDLVFESQSTVFIRGSGGFGGKKSGKDRGAASAANKP---- 792
Query: 177 SYPTNQVSRISIPNSAPSAVYEDQTQQSQALLYRLSGDYNPLHSDPMVAQVAGFTRPILH 236
P+ V ++T +QA LYRLSGDYNPLH DP AQV GF +PILH
Sbjct: 793 ------------PSRKADKVVTEKTTDAQAALYRLSGDYNPLHIDPSFAQVGGFDKPILH 840
Query: 237 GLSSLGFAIRAVIKSFCNGDPTAVKSIFGRFLLHVYPGETLVTEMWLQGQRVLYQTKVKE 296
GL S G + + + + + A K I RF HV+PGETL T MW +G +V++ T+V E
Sbjct: 841 GLCSFGISGKHIFREYG-----AYKDIKVRFTGHVFPGETLETSMWKEGNKVIFTTRVVE 895
Query: 297 RNRAVL 302
R+ L
Sbjct: 896 RDTQAL 901
>AK110225
Length = 900
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 153/283 (54%), Gaps = 29/283 (10%)
Query: 27 FAYDERDVALYALGVGACGADAIDEKELHLVYHRDGQ----PHIKALPTFASLFPFKNSN 82
F YDE+DV LY LG+GA D L V+ + P +P F ++ P+ +
Sbjct: 628 FQYDEKDVILYNLGIGAKRTD------LPFVFESNDNFQVYPTFGVIPQFNAVPPYSFDD 681
Query: 83 GLGIVDVPGLNFDASLLLHGQHYIEIYK-PIHSRANVVNKTKIAGLHDKGKATILEIETT 141
VP NF +LLHG+ ++EI K PI + A ++ K+ + DKG A ++ TT
Sbjct: 682 -----IVP--NFSPMMLLHGEQFLEIRKYPIPTSAKLITYPKLIEVMDKGAAGVIVQGTT 734
Query: 142 THVKDSGEVLCMNRSTIYLRGAGGFS-DPSRPYSYASYPTNQVSRISIPNSAPSAVYEDQ 200
T +GE + N ST+++RG+G F +P A+ ++ P AP AV E++
Sbjct: 735 TVDAATGEEIFYNESTVFIRGSGSFGGNPKGGNRGAATAVHKP-----PQRAPDAVVEEK 789
Query: 201 TQQSQALLYRLSGDYNPLHSDPMVAQVAGFTRPILHGLSSLGFAIRAVIKSFCNGDPTAV 260
T + QA LYRLSGD NPLH DP ++V GF PILHGL G A + V+ +F
Sbjct: 790 TTEEQAALYRLSGDRNPLHIDPEFSKVGGFKVPILHGLCFFGIAAKHVLATFGQ-----Y 844
Query: 261 KSIFGRFLLHVYPGETLVTEMWLQGQRVLYQTKVKERNRAVLS 303
K++ RF V PG+TLVTEMW G V++Q KVKE + +S
Sbjct: 845 KNVKVRFAGTVLPGQTLVTEMWKVGNTVVFQVKVKETGKLCIS 887
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,163,878
Number of extensions: 463947
Number of successful extensions: 1049
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 4
Length of query: 315
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 214
Effective length of database: 11,762,187
Effective search space: 2517108018
Effective search space used: 2517108018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)