BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0544900 Os09g0544900|AK071684
         (315 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76150.1  | chr1:28575236-28577637 REVERSE LENGTH=310          405   e-113

>AT1G76150.1 | chr1:28575236-28577637 REVERSE LENGTH=310
          Length = 309

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/304 (61%), Positives = 241/304 (79%), Gaps = 4/304 (1%)

Query: 13  DPEAVLSHSFPEVSFAYDERDVALYALGVGACGADAIDEKELHLVYHRDGQPHIKALPTF 72
           + + +L+H  PE  + Y+ERDVA+YALG+GACG DA+D  EL  VYHR+GQ  I+ LPTF
Sbjct: 9   NSDLLLAHKLPETRYTYNERDVAIYALGIGACGQDAVDSDELKFVYHRNGQDLIQVLPTF 68

Query: 73  ASLFPFKN-SNGLGIVDVPGLNFDASLLLHGQHYIEIYKPIHSRANVVNKTKIAGLHDKG 131
           ASLF   + + GL   D+PG  +D SLLLHGQ YIEIY+P+ S+A+++NK  +AGL DKG
Sbjct: 69  ASLFTLGSLTEGL---DLPGFKYDPSLLLHGQQYIEIYRPLPSKASLINKVSLAGLQDKG 125

Query: 132 KATILEIETTTHVKDSGEVLCMNRSTIYLRGAGGFSDPSRPYSYASYPTNQVSRISIPNS 191
           KA ILE+ET ++ + SGE+LCMNR+T++LRGAGGFS+ S+P+SY +YP+NQ   + IP  
Sbjct: 126 KAAILELETRSYEEGSGELLCMNRTTVFLRGAGGFSNSSQPFSYKNYPSNQGLAVKIPQR 185

Query: 192 APSAVYEDQTQQSQALLYRLSGDYNPLHSDPMVAQVAGFTRPILHGLSSLGFAIRAVIKS 251
            P  V E++TQ SQALLYRLSGDYNPLHSDP  A++AGF RPILHGL +LGFAI+A+IK 
Sbjct: 186 QPLTVCEERTQPSQALLYRLSGDYNPLHSDPEFAKLAGFPRPILHGLCTLGFAIKAIIKC 245

Query: 252 FCNGDPTAVKSIFGRFLLHVYPGETLVTEMWLQGQRVLYQTKVKERNRAVLSGYVLLKHI 311
            C GDPTAVK+I GRFL  V+PGETL+TEMWL+G RV+YQTKVKERN+ VL+GYV ++ +
Sbjct: 246 VCKGDPTAVKTISGRFLTTVFPGETLITEMWLEGLRVIYQTKVKERNKTVLAGYVDIRGL 305

Query: 312 PSSL 315
            SSL
Sbjct: 306 SSSL 309



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,066,209
Number of extensions: 297493
Number of successful extensions: 590
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)