Os09g0541900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 26S proteasome subunit RPN3a.
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Os09g0541900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 26S proteasome subunit RPN3a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7.91 | 0.132 | 11.6 | 0.223 | 0.185 | 0.282 | -0.226 | 0.0977 | 0.106 | 17.3 | 0.8149 | 1417 | -- | -- |
| 7.92 | 0.131 | 11.6 | 0.223 | 0.185 | 0.281 | -0.228 | -- | 0.106 | 17.3 | 0.8172 | 1412 | -- | -- |
| 8 | 0.132 | 11.6 | 0.224 | 0.185 | 0.279 | -- | 0.115 | 0.107 | 18 | 0.7897 | 1382 | -- | -- |
| 8 | 0.132 | 11.6 | 0.224 | 0.185 | 0.279 | -- | -- | 0.107 | 18 | 0.7875 | 1380 | -- | -- |
| 9.79 | 0.146 | 11.6 | 0.222 | -- | 0.291 | -- | 0.121 | 0.102 | -- | 0.8166 | 1416 | -- | -- |
| 8.85 | 0.139 | 11.6 | 0.176 | 0.189 | -- | -0.211 | -- | 0.0703 | 17.1 | -- | -- | -- | -- |
| 8.96 | 0.14 | 11.6 | 0.176 | 0.188 | -- | -- | -- | 0.0693 | 17.2 | -- | -- | -- | -- |
| 9.81 | 0.146 | 11.6 | 0.231 | -- | 0.276 | -- | -- | 0.103 | -- | 0.8135 | 1413 | -- | -- |
| 9.41 | 0.143 | 11.6 | -- | 0.195 | 0.258 | -- | -- | 0.104 | 18.1 | 1.147 | 1373 | -- | -- |
| 10.8 | 0.154 | 11.6 | 0.169 | -- | -- | -- | -- | 0.0645 | -- | -- | -- | -- | -- |
| 9.77 | 0.146 | 11.6 | -- | 0.185 | -- | -- | -- | 0.0497 | 17.2 | -- | -- | -- | -- |
| 11 | 0.154 | 11.6 | -- | -- | 0.164 | -- | -- | 0.0779 | -- | 2.14 | 1408 | -- | -- |
| 11.56 | 0.159 | 11.6 | -- | -- | -- | -- | -- | 0.0458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 6.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 8 | 7.05 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 9 | 7.05 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 20 | 7.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 37 | 7.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 55 | 7.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 149 | 7.36 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 150 | 7.36 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 152 | 7.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 181 | 7.39 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 6 |
| 182 | 7.39 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 8 |
| 188 | 7.40 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 12 |
| 216 | 7.42 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 5 | 14 |
| 217 | 7.42 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 232 | 7.43 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 267 | 7.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 11 |
| 333 | 7.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 5 |
| 352 | 7.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 367 | 7.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 531 | 7.56 | temperature | 30 | 30 | < th | dose independent | rect. | 5 | 14 |
| 549 | 7.57 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 6 |
| 701 | 7.63 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 16 |
| 725 | 7.63 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 772 | 7.66 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 844 | 7.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 897 | 7.70 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 934 | 7.71 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 1 |
| 943 | 7.71 | radiation | 40 | 30 | < th | dose dependent | rect. | 5 | 5 |
| 968 | 7.72 | temperature | 15 | 30 | > th | dose independent | rect. | 19 | 10 |