BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0541900 Os09g0541900|AK101536
(487 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20200.1 | chr1:7001409-7004154 REVERSE LENGTH=489 649 0.0
AT1G75990.1 | chr1:28524623-28526718 REVERSE LENGTH=488 642 0.0
>AT1G20200.1 | chr1:7001409-7004154 REVERSE LENGTH=489
Length = 488
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/488 (67%), Positives = 364/488 (74%), Gaps = 1/488 (0%)
Query: 1 MPEDVEMNDSXXXXXXXXXXXXSTLQHLKEIASVIEAGSLTKEVRRISXXXXXXXXXXXX 60
M +DVEM D+ ST+Q+LKEIA++I+ GS TKEVRRI+
Sbjct: 1 MTQDVEMKDNNTPSQSIISSSTSTMQNLKEIAALIDTGSYTKEVRRIARAVRLTIGLRQK 60
Query: 61 XXXXXXXXXXXXXXPHSSEAFARLSSLLPKEDGSEMDVDLAAPAAQVSIKHGLP-EIEIY 119
SEA +RLSS +PK D +M+VD A+ A Q + LP E+EIY
Sbjct: 61 LTGSVLSSFLDFALVPGSEAHSRLSSFVPKGDEHDMEVDTASSATQAAPSKHLPAELEIY 120
Query: 120 CYLLVLIFLIDNKKYDEAKACASASITRLKNLNRRTVDVLASRVFTYYSYVHELTSSLAE 179
CY +VL+FLID KKY+EAKAC+SASI RLKN+NRRT+DV+ASR++ YYS +E T LAE
Sbjct: 121 CYFIVLLFLIDQKKYNEAKACSSASIARLKNVNRRTIDVIASRLYFYYSLSYEQTGDLAE 180
Query: 180 IRGTLLALHRMATLHRDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFC 239
IRGTLLALH ATL DELGQET DQAEKLRSKAPRFEAHSNQQFC
Sbjct: 181 IRGTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFC 240
Query: 240 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPTTARGFRVQCNKWAIIVRLLLGEIPERTV 299
RYLFYLGKIRTIQLEYTDAKESLLQAARKAP A GFR+QCNKWAI+VRLLLGEIPER++
Sbjct: 241 RYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLLGEIPERSI 300
Query: 300 FMQKGMKAALAPYFELTNAVRVGDLELFRAVAEKFASTFSADRTRNLIVRLRHNVIRTGL 359
F QKGM+ AL PYFELTNAVR+GDLELFR V EKF TF+ DRT NLIVRLRHNVIRTGL
Sbjct: 301 FTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGL 360
Query: 360 RNISISYSRISLADIAKKLRLDSENPVADAESIVAKAIRDGAIDATIDHANGWMVSKETG 419
RNISISYSRISL D+AKKLRL+SENPVADAESIVAKAIRDGAIDATIDH NG MVSKETG
Sbjct: 361 RNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETG 420
Query: 420 DVYSTNEPQIAFNSRIAFCLNMHNEAVKALRFPPNSHXXXXXXXXXXXXXXXXXXXXXHM 479
D+YSTNEPQ AFNSRIAFCLNMHNEAV+ALRFPPN+H HM
Sbjct: 421 DIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESDEKRRERKQQEEELAKHM 480
Query: 480 AEEDDDDF 487
AEEDDDDF
Sbjct: 481 AEEDDDDF 488
>AT1G75990.1 | chr1:28524623-28526718 REVERSE LENGTH=488
Length = 487
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/487 (65%), Positives = 360/487 (73%)
Query: 1 MPEDVEMNDSXXXXXXXXXXXXSTLQHLKEIASVIEAGSLTKEVRRISXXXXXXXXXXXX 60
M +DVEM D+ STLQ+LKEIA++I+ GS TKEVRRI+
Sbjct: 1 MTQDVEMKDNQTPTQSVVSAPTSTLQNLKEIAALIDTGSYTKEVRRIARAVRLTVGLRRK 60
Query: 61 XXXXXXXXXXXXXXPHSSEAFARLSSLLPKEDGSEMDVDLAAPAAQVSIKHGLPEIEIYC 120
SEA RLSS +PK D +M+VD A+ +Q KH E+EIYC
Sbjct: 61 LTGSVISSFLDFALVPGSEAHTRLSSFVPKSDEHDMEVDTASSNSQAPPKHLPAELEIYC 120
Query: 121 YLLVLIFLIDNKKYDEAKACASASITRLKNLNRRTVDVLASRVFTYYSYVHELTSSLAEI 180
Y +VL+FLID KKY+EAK C++ASI RLK++NRRTVDV+AS+++ YYS +ELT+ LAEI
Sbjct: 121 YFIVLLFLIDQKKYNEAKVCSTASIARLKSVNRRTVDVIASKLYFYYSLSYELTNDLAEI 180
Query: 181 RGTLLALHRMATLHRDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCR 240
R TLLALH ATL DELGQET DQAEKLRSKAPRFEAHSNQQFCR
Sbjct: 181 RSTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCR 240
Query: 241 YLFYLGKIRTIQLEYTDAKESLLQAARKAPTTARGFRVQCNKWAIIVRLLLGEIPERTVF 300
YLFYLGKIRTIQLEYTDAKESLLQAARKAP + GFR+QCNKWAIIVRLLLGEIPER++F
Sbjct: 241 YLFYLGKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLLGEIPERSIF 300
Query: 301 MQKGMKAALAPYFELTNAVRVGDLELFRAVAEKFASTFSADRTRNLIVRLRHNVIRTGLR 360
QKGM+ L PYFELTNAVR+GDLELF + EKFA TF+ DRT NLIVRLRHNVIRTGLR
Sbjct: 301 TQKGMEKTLRPYFELTNAVRIGDLELFGKIQEKFAKTFAEDRTHNLIVRLRHNVIRTGLR 360
Query: 361 NISISYSRISLADIAKKLRLDSENPVADAESIVAKAIRDGAIDATIDHANGWMVSKETGD 420
NISISYSRISL D+A+KLRL+S NPVADAESIVAKAIRDGAIDATIDH NG MVSKETGD
Sbjct: 361 NISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETGD 420
Query: 421 VYSTNEPQIAFNSRIAFCLNMHNEAVKALRFPPNSHXXXXXXXXXXXXXXXXXXXXXHMA 480
+YSTNEPQ AFNSRIAFCLNMHNEAV+ALRFPPN+H +MA
Sbjct: 421 IYSTNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHREKESEEKRREMKQQEEELAKYMA 480
Query: 481 EEDDDDF 487
EEDDDDF
Sbjct: 481 EEDDDDF 487
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,689,201
Number of extensions: 253433
Number of successful extensions: 575
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 3
Length of query: 487
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 385
Effective length of database: 8,310,137
Effective search space: 3199402745
Effective search space used: 3199402745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)