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Os09g0541100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plastocyanin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.81 (0.0393) R2 : 0.525
β1 : 1.14 (0.142) R2dD : 0.0693 R2D : -0.169
β2 : 0.712 (0.1) R2dC : 0.0522 R2C : -0.0942
β3 : 1.13 (0.117) R2dE : 0.111 R2E : -0.211
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.35 (0.414) R2dD*E : 0.0364 R2D*E : -0.151
γ1 : 1.8 (0.0886) R2dN8 : 0.669 R2N8 : 0.255
σ : 0.721
deviance : 239.82
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C
peak time of C : 6.67
E
wheather : radiation
threshold : 19.98
memory length : 1422
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.3
open length of G : 2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
236.77 0.723 5.81 1.15 0.712 1.13 -1.14 -2.42 1.8 6.43 19.96 1423 11.3 1.98
254.53 0.743 5.81 1.1 0.728 1.21 -1.11 -- 1.8 6.59 19.65 1408 11.2 2.03
239.82 0.721 5.81 1.14 0.712 1.13 -- -2.35 1.8 6.67 19.98 1422 11.3 2
256.94 0.747 5.81 1.11 0.735 1.2 -- -- 1.77 6.89 19.91 1408 11.3 1.97
266.05 0.76 5.81 1.15 -- 1.09 -- -2.41 1.81 -- 19.98 1422 11.3 1.99
307.81 0.822 5.89 0.973 0.675 -- -1.12 -- 1.43 6.36 -- -- -- --
310.66 0.825 5.89 0.961 0.672 -- -- -- 1.44 6.74 -- -- -- --
283.31 0.784 5.81 1.07 -- 1.2 -- -- 1.78 -- 19.98 1408 11.3 1.98
286.79 0.789 5.81 -- 0.751 1.24 -- -- 1.74 7.01 19.93 1408 11.3 1.97
334.26 0.854 5.9 0.977 -- -- -- -- 1.45 -- -- -- -- --
335.02 0.856 5.91 -- 0.684 -- -- -- 1.33 6.65 -- -- -- --
313.43 0.825 5.83 -- -- 1.19 -- -- 1.71 -- 19.92 1408 11.3 1.97
359.43 0.885 5.93 -- -- -- -- -- 1.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.04 radiation 20 1440 < th dose independent rect. 11 2
2 243.92 radiation 20 1440 < th dose independent rect. 11 5
7 246.29 radiation 20 1440 < th dose independent rect. 11 13
9 246.30 radiation 20 1440 < th dose independent rect. 11 16
10 246.32 radiation 20 1440 < th dose independent rect. 11 11
15 246.33 radiation 20 1440 < th dose independent rect. 11 9
22 247.81 radiation 30 1440 < th dose dependent rect. 11 2
27 248.96 radiation 1 1440 > th dose dependent rect. 12 1
46 250.44 wind 9 43200 > th dose independent rect. 16 2
62 250.95 wind 9 43200 < th dose independent rect. 16 2
66 251.51 radiation 20 1440 < th dose independent sin 19 NA
72 251.93 radiation 30 1440 < th dose dependent rect. 11 5
73 251.95 wind 7 43200 < th dose independent rect. 17 13
74 252.07 wind 7 43200 > th dose independent rect. 17 13
81 252.42 radiation 20 1440 < th dose independent rect. 8 8
93 252.76 humidity 70 1440 < th dose independent rect. 12 1
94 252.78 radiation 20 1440 < th dose independent rect. 8 16
95 252.78 radiation 20 1440 < th dose independent rect. 8 19
98 252.80 radiation 20 1440 < th dose independent rect. 8 12
104 252.81 radiation 20 1440 < th dose independent rect. 8 23
124 253.05 humidity 90 1440 < th dose dependent rect. 12 2
144 253.22 humidity 50 1440 > th dose dependent rect. 12 2
152 253.24 radiation 30 1440 < th dose dependent rect. 11 20
158 253.29 radiation 30 1440 < th dose dependent rect. 11 13
160 253.30 radiation 30 1440 < th dose dependent rect. 11 16
163 253.32 radiation 30 1440 < th dose dependent rect. 11 18
165 253.33 radiation 30 1440 < th dose dependent rect. 11 11
169 253.34 radiation 30 1440 < th dose dependent rect. 11 9
175 253.63 humidity 70 1440 < th dose dependent rect. 12 4
197 253.99 radiation 1 1440 > th dose dependent rect. 11 5
203 254.24 radiation 10 1440 < th dose dependent rect. 8 7
206 254.38 radiation 20 1440 > th dose independent rect. 11 2
214 254.56 radiation 20 1440 < th dose independent rect. 6 10
215 254.56 radiation 20 1440 < th dose independent rect. 21 19
216 254.57 radiation 20 1440 < th dose independent rect. 19 21
222 254.58 radiation 20 1440 < th dose independent rect. 2 14
225 254.59 radiation 20 1440 < th dose independent rect. 23 17
229 254.60 radiation 1 1440 > th dose dependent rect. 11 8
293 254.95 radiation 20 1440 < th dose independent rect. 2 22
294 254.95 radiation 20 1440 < th dose independent rect. 21 23
310 254.97 radiation 20 1440 < th dose independent no NA NA
315 254.97 radiation 20 1440 < th dose independent rect. 2 18
325 254.97 radiation 20 1440 < th dose independent rect. 23 23
333 254.98 radiation 20 1440 < th dose independent rect. 23 21
391 255.26 radiation 30 1440 < th dose dependent sin 20 NA
425 255.39 radiation 20 1440 < th dose independent rect. 14 2
463 255.53 radiation 20 1440 < th dose dependent rect. 8 16
467 255.54 radiation 20 1440 < th dose dependent rect. 8 19
470 255.56 radiation 20 1440 < th dose dependent rect. 8 14
474 255.57 radiation 20 1440 < th dose dependent rect. 8 12
561 255.86 radiation 30 1440 < th dose dependent rect. 8 8
563 255.87 humidity 70 1440 > th dose independent rect. 12 1
567 255.95 wind 7 43200 > th dose dependent rect. 16 14
572 256.00 radiation 20 1440 < th dose independent rect. 15 23
771 256.90 humidity 60 1440 > th dose independent rect. 14 2
791 257.03 temperature 20 4320 > th dose dependent rect. 17 1
796 257.09 humidity 80 4320 < th dose independent rect. 8 1
833 257.34 humidity 70 1440 < th dose independent rect. 11 8
846 257.39 wind 7 43200 < th dose independent sin 11 NA
873 257.55 humidity 70 1440 < th dose independent rect. 11 22
879 257.58 wind 7 43200 > th dose independent sin 11 NA
933 257.86 radiation 1 1440 > th dose dependent sin 18 NA
934 257.86 radiation 20 1440 < th dose dependent rect. 17 23
987 258.05 radiation 20 1440 < th dose dependent rect. 2 22
989 258.05 radiation 20 1440 < th dose dependent rect. 21 23
997 258.07 radiation 20 1440 < th dose dependent rect. 2 20