BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0541100 Os09g0541100|J065083P07
(223 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32300.1 | chr2:13722510-13723464 FORWARD LENGTH=262 74 4e-14
AT2G26720.1 | chr2:11384782-11385402 FORWARD LENGTH=207 70 6e-13
AT2G31050.1 | chr2:13212150-13212752 FORWARD LENGTH=201 68 4e-12
AT3G17675.1 | chr3:6042244-6042781 REVERSE LENGTH=107 64 6e-11
AT5G26330.1 | chr5:9241614-9242635 REVERSE LENGTH=188 63 9e-11
AT1G72230.1 | chr1:27188287-27189093 FORWARD LENGTH=182 59 2e-09
AT1G45063.1 | chr1:17033335-17034886 REVERSE LENGTH=370 57 7e-09
AT3G27200.1 | chr3:10043738-10044340 REVERSE LENGTH=175 57 8e-09
AT2G27035.1 | chr2:11535670-11536251 FORWARD LENGTH=164 53 1e-07
AT2G25060.1 | chr2:10662308-10662930 FORWARD LENGTH=183 50 8e-07
>AT2G32300.1 | chr2:13722510-13723464 FORWARD LENGTH=262
Length = 261
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 57/132 (43%), Gaps = 34/132 (25%)
Query: 31 TEYTVGDSEGWTIGPSYLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPDV 90
T++T+G GWT+G S W+ F GD L
Sbjct: 24 TDHTIGGPSGWTVGASLRTWAAGQTFAVGDNL---------------------------- 55
Query: 91 VASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSG 150
VFSY HDV+ V++ F +C A + + +A+G +V L PG YFIC + G
Sbjct: 56 -----VFSYPAAFHDVVEVTKPEFDSCQ-AVKPLITFANGNSLVPLTTPGKRYFICGMPG 109
Query: 151 HCLGGMKFSVAV 162
HC GMK V V
Sbjct: 110 HCSQGMKLEVNV 121
>AT2G26720.1 | chr2:11384782-11385402 FORWARD LENGTH=207
Length = 206
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 35/133 (26%)
Query: 31 TEYTVGDSEGWT-IGPSYLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPD 89
T + VG+++GWT IG Y AW++ F GDTL
Sbjct: 27 TVHKVGNTKGWTMIGGDYEAWASSRVFQVGDTL--------------------------- 59
Query: 90 VVASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVS 149
VF+Y + HDV V+ + F C+ +++ ++R+ +G D + L PG +FIC V
Sbjct: 60 ------VFAYNKDYHDVTEVTHNDFEMCE-SSKPLRRYKTGSDSISLTKPGLQHFICGVP 112
Query: 150 GHCLGGMKFSVAV 162
GHC G K + V
Sbjct: 113 GHCKKGQKLQIHV 125
>AT2G31050.1 | chr2:13212150-13212752 FORWARD LENGTH=201
Length = 200
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 35/133 (26%)
Query: 31 TEYTVGDSEGWTI-GPSYLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPD 89
T + VGDS+GWTI +Y W++ F GD+L
Sbjct: 27 TVHKVGDSDGWTIMSVNYETWASTITFQVGDSL--------------------------- 59
Query: 90 VVASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVS 149
VF Y + HDV V+ + + C+P+ + + R+ +G D+V L PG +FIC
Sbjct: 60 ------VFKYNKDFHDVTEVTHNDYEMCEPS-KPLARYETGSDIVILTKPGLQHFICGFP 112
Query: 150 GHCLGGMKFSVAV 162
GHC G K + V
Sbjct: 113 GHCDMGQKLQIHV 125
>AT3G17675.1 | chr3:6042244-6042781 REVERSE LENGTH=107
Length = 106
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 34/132 (25%)
Query: 31 TEYTVGDSEGWTIGPSYLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPDV 90
TE+ VGDS GW + +Y W+ F GD L
Sbjct: 7 TEHIVGDSNGWELFTNYTNWTQGREFHVGDVL---------------------------- 38
Query: 91 VASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSG 150
VF+Y QH+V++V+ A+ C N T + G D + L+ G +FIC V
Sbjct: 39 -----VFNYKSDQHNVMQVNSTAYTDCGLDNYTT-LFTKGNDSIILSEVGKLWFICGVDD 92
Query: 151 HCLGGMKFSVAV 162
HC+ G K S+ V
Sbjct: 93 HCVNGQKLSINV 104
>AT5G26330.1 | chr5:9241614-9242635 REVERSE LENGTH=188
Length = 187
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 36/132 (27%)
Query: 33 YTVGDSEGWTI--GPSYLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPDV 90
Y VGDS GWT Y W++ F GDT+
Sbjct: 24 YKVGDSAGWTTIANVDYKLWASTKTFHIGDTV---------------------------- 55
Query: 91 VASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSG 150
+F Y + H+V+RV+ +R+C+ ++ + + +G D + L G ++F C V G
Sbjct: 56 -----LFEYNPQFHNVMRVTHPMYRSCN-TSKPISTFTTGNDSITLTNHGHHFFFCGVPG 109
Query: 151 HCLGGMKFSVAV 162
HCL G K + V
Sbjct: 110 HCLAGQKLDLHV 121
>AT1G72230.1 | chr1:27188287-27189093 FORWARD LENGTH=182
Length = 181
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 35/122 (28%)
Query: 41 WTIGPSYLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPDVVASCAVFSYV 100
W++G Y + +T +F GDT+ VF+Y
Sbjct: 31 WSLGKDYSSLATGKSFAVGDTI---------------------------------VFNY- 56
Query: 101 QRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSGHCLGGMKFSV 160
H V VS+ +++C N + +SG + L PG +YFIC + GHC GGMK SV
Sbjct: 57 GAGHTVDEVSESDYKSCTLGNA-ISSDSSGTTSIALKTPGPHYFICGIPGHCTGGMKLSV 115
Query: 161 AV 162
V
Sbjct: 116 IV 117
>AT1G45063.1 | chr1:17033335-17034886 REVERSE LENGTH=370
Length = 369
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 37/134 (27%)
Query: 33 YTVGDSEGWTIGPS--YLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPDV 90
Y VGDS+ W + S Y WS + F GD L
Sbjct: 149 YKVGDSKSWGVYDSDFYYNWSKEKQFNVGDGL---------------------------- 180
Query: 91 VASCAVFSYVQRQHDVLRVSQD-AFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVS 149
+F Y + V +S D F CDP + + +G D+++L PG +YFI +
Sbjct: 181 -----LFEYNNEVNGVYEISGDLEFLNCDPTS-PIAVHKTGHDIIKLTKPGIHYFISSEP 234
Query: 150 GHCLGGMKFSVAVG 163
GHC G+K V VG
Sbjct: 235 GHCGAGLKLQVVVG 248
>AT3G27200.1 | chr3:10043738-10044340 REVERSE LENGTH=175
Length = 174
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 34/130 (26%)
Query: 33 YTVGDSEGWTIGPSYLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPDVVA 92
+ +G S+GW + +WS+ +F GD +
Sbjct: 26 HVIGGSQGWEQSVDFDSWSSDQSFKVGDQI------------------------------ 55
Query: 93 SCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSGHC 152
VF Y + V S+ A+++CD +V +SG DVV+L+ G+ YF C GHC
Sbjct: 56 ---VFKYSELHSVVELGSETAYKSCDLGT-SVNSLSSGNDVVKLSKTGTRYFACGTVGHC 111
Query: 153 LGGMKFSVAV 162
GMK V V
Sbjct: 112 EQGMKIKVNV 121
>AT2G27035.1 | chr2:11535670-11536251 FORWARD LENGTH=164
Length = 163
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 97 FSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSGHCLGGM 156
F + + +H++L+V++ ++ C + GRDV +L P YYFIC G+CL GM
Sbjct: 60 FGFNRTRHNILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEPKPYYFICG-RGYCLKGM 118
Query: 157 KFSVAV 162
K ++ V
Sbjct: 119 KLAITV 124
>AT2G25060.1 | chr2:10662308-10662930 FORWARD LENGTH=183
Length = 182
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 39/137 (28%)
Query: 31 TEYTVGDSEG-WTIGPS----YLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXX 85
E TVG G W I PS + W+ K F GD +
Sbjct: 29 NEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFI----------------------- 65
Query: 86 XXPDVVASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFI 145
VF Y + VL V+++A+ +C+ N + + G V+L G +YFI
Sbjct: 66 ----------VFRYESGKDSVLEVTKEAYNSCNTTNP-LANYTDGETKVKLDRSGPFYFI 114
Query: 146 CNVSGHCLGGMKFSVAV 162
+GHC G K S+ V
Sbjct: 115 SGANGHCEKGQKLSLVV 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,037,657
Number of extensions: 81779
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 12
Length of query: 223
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 128
Effective length of database: 8,502,049
Effective search space: 1088262272
Effective search space used: 1088262272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)