BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0541100 Os09g0541100|J065083P07
         (223 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0541100  Plastocyanin-like domain containing protein         283   5e-77

>Os09g0541100 Plastocyanin-like domain containing protein
          Length = 223

 Score =  283 bits (725), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 144/193 (74%), Positives = 144/193 (74%)

Query: 31  TEYTVGDSEGWTIGPSYLAWSTKYNFTAGDTLGQFVRSLAVDXXXXXXXXXXXXXXXPDV 90
           TEYTVGDSEGWTIGPSYLAWSTKYNFTAGDTLGQFVRSLAVD               PDV
Sbjct: 31  TEYTVGDSEGWTIGPSYLAWSTKYNFTAGDTLGQFVRSLAVDSLMISISSTSGSIRSPDV 90

Query: 91  VASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSG 150
           VASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSG
Sbjct: 91  VASCAVFSYVQRQHDVLRVSQDAFRTCDPANQTVQRWASGRDVVELAAPGSYYFICNVSG 150

Query: 151 HCLGGMKFSVAVGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTWRRRRVALMVQ 210
           HCLGGMKFSVAVGE                                  TWRRRRVALMVQ
Sbjct: 151 HCLGGMKFSVAVGEPLPPPSPPPPPPRAPFLAPPPPPPVGSGAAAASSTWRRRRVALMVQ 210

Query: 211 VSCLALIIIGMWN 223
           VSCLALIIIGMWN
Sbjct: 211 VSCLALIIIGMWN 223



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,962,284
Number of extensions: 138819
Number of successful extensions: 471
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)