Os09g0540500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0540500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.51 | 0.244 | 10.3 | 0.513 | 0.219 | 0.895 | -0.309 | 1.32 | 0.00338 | 8.63 | 10 | 10 | -- | -- |
| 28.86 | 0.252 | 10.3 | 0.326 | 0.209 | 0.935 | -0.159 | -- | -0.0479 | 8.54 | 10 | 10 | -- | -- |
| 27.79 | 0.246 | 10.3 | 0.486 | 0.219 | 0.881 | -- | 1.16 | 0.000326 | 8.96 | 11.77 | 10 | -- | -- |
| 28.9 | 0.25 | 10.3 | 0.308 | 0.216 | 0.83 | -- | -- | -0.0518 | 8.78 | 16.82 | 18 | -- | -- |
| 30.37 | 0.257 | 10.3 | 0.468 | -- | 0.946 | -- | 1.11 | -0.00812 | -- | 14.32 | 4 | -- | -- |
| 36.27 | 0.282 | 10.3 | 0.491 | 0.364 | -- | 0.282 | -- | 0.0828 | 12.2 | -- | -- | -- | -- |
| 36.59 | 0.283 | 10.3 | 0.502 | 0.364 | -- | -- | -- | 0.0837 | 12 | -- | -- | -- | -- |
| 31.27 | 0.26 | 10.3 | 0.331 | -- | 0.801 | -- | -- | -0.0478 | -- | 18.5 | 4 | -- | -- |
| 31.45 | 0.261 | 10.3 | -- | 0.214 | 1 | -- | -- | -0.0919 | 8.37 | 15.3 | 18 | -- | -- |
| 44.93 | 0.313 | 10.3 | 0.49 | -- | -- | -- | -- | 0.0786 | -- | -- | -- | -- | -- |
| 43.22 | 0.308 | 10.3 | -- | 0.358 | -- | -- | -- | 0.0278 | 11.9 | -- | -- | -- | -- |
| 33.86 | 0.271 | 10.3 | -- | -- | 1.07 | -- | -- | -0.0972 | -- | 13.29 | 2 | -- | -- |
| 51.28 | 0.334 | 10.3 | -- | -- | -- | -- | -- | 0.0242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 4 | 26.68 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 12 | 26.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 13 | 26.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 49 | 27.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 65 | 27.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 69 | 27.51 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 94 | 27.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 106 | 27.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 118 | 27.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 122 | 27.82 | temperature | 15 | 90 | > th | dose dependent | sin | 4 | NA |
| 127 | 27.83 | temperature | 15 | 10 | > th | dose dependent | sin | 3 | NA |
| 165 | 27.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 189 | 28.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 198 | 28.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 220 | 28.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 254 | 28.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 261 | 28.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 270 | 28.40 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 291 | 28.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 300 | 28.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 310 | 28.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 348 | 28.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 352 | 28.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 365 | 28.69 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 20 |
| 369 | 28.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 372 | 28.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 373 | 28.72 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 432 | 28.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 434 | 28.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 435 | 28.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 439 | 28.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 446 | 28.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 463 | 28.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 464 | 28.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 476 | 28.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 501 | 28.98 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 529 | 29.01 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 541 | 29.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 574 | 29.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 578 | 29.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 596 | 29.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 697 | 29.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 705 | 29.14 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 720 | 29.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 732 | 29.15 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 739 | 29.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 746 | 29.16 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 758 | 29.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 873 | 29.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 894 | 29.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 895 | 29.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 931 | 29.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 936 | 29.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 939 | 29.29 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 950 | 29.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 981 | 29.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |