BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0540500 Os09g0540500|AK120729
(414 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0540500 Conserved hypothetical protein 434 e-122
Os11g0149000 138 8e-33
>Os09g0540500 Conserved hypothetical protein
Length = 414
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 242/394 (61%), Positives = 242/394 (61%)
Query: 1 MMQSHHPSPARLGLTXXXXXXXXXXXXXXXTSSPPQGNXXXXXXXXXXXXXXXXXXXXXX 60
MMQSHHPSPARLGLT TSSPPQGN
Sbjct: 1 MMQSHHPSPARLGLTASSPSLPPNPAAGNPTSSPPQGNPSAAAAVGAAAAAAPTLTTSPS 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXNLFELSPSRAAWISAYRGXXXXXXXXXXXXXXXXXXX 120
NLFELSPSRAAWISAYRG
Sbjct: 61 LLPLLPPLPRAQALLQLISALASNLFELSPSRAAWISAYRGSLPTFLPSPSSAPPPPLPA 120
Query: 121 XXXXXKEALSLLNTLQTQLFEAVAELQETXXXXXXXXXXXXXXXXXXXSILAFAKKLREA 180
KEALSLLNTLQTQLFEAVAELQET SILAFAKKLREA
Sbjct: 121 PISSTKEALSLLNTLQTQLFEAVAELQETLDLQDARARLAREARAKDASILAFAKKLREA 180
Query: 181 HHVLDRLVDDYADYRRDPKRPRGAAAADDPEPVSDGDFGASLHSKLNLDDVLTYAHRISY 240
HHVLDRLVDDYADYRRDPKRPRGAAAADDPEPVSDGDFGASLHSKLNLDDVLTYAHRISY
Sbjct: 181 HHVLDRLVDDYADYRRDPKRPRGAAAADDPEPVSDGDFGASLHSKLNLDDVLTYAHRISY 240
Query: 241 TTFAPPEHXXXXXXXXXXXXXXQENEMRMSQLYQFADLDVGVPKSQEAKERTAAEGDATP 300
TTFAPPEH QENEMRMSQLYQFADLDVGVPKSQEAKERTAAEGDATP
Sbjct: 241 TTFAPPEHGAGLPLRGALPPAPQENEMRMSQLYQFADLDVGVPKSQEAKERTAAEGDATP 300
Query: 301 LFQPSPTQEAAVLPITVPHPHGWRNXXXXXXXXXXXXXXXXXXXITLPPDGILAGVKGEE 360
LFQPSPTQEAAVLPITVPHPHGWRN ITLPPDGILAGVKGEE
Sbjct: 301 LFQPSPTQEAAVLPITVPHPHGWRNGALPLEIPLPPPGWKPGDPITLPPDGILAGVKGEE 360
Query: 361 PRASXXXXXXXXXXXXXXXXEPIQVRHVDLDINN 394
PRAS EPIQVRHVDLDINN
Sbjct: 361 PRASVQQMPVVVPAMVPKAQEPIQVRHVDLDINN 394
>Os11g0149000
Length = 98
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 71/91 (78%)
Query: 138 QLFEAVAELQETXXXXXXXXXXXXXXXXXXXSILAFAKKLREAHHVLDRLVDDYADYRRD 197
Q FEAVAELQET SILAFAKKLREAHHVLDRLVDDYADYRRD
Sbjct: 2 QFFEAVAELQETLDLQDARARLARETRAKDASILAFAKKLREAHHVLDRLVDDYADYRRD 61
Query: 198 PKRPRGAAAADDPEPVSDGDFGASLHSKLNL 228
PKRPRGAAAADDPEPVSDGDFGASLHSKL+L
Sbjct: 62 PKRPRGAAAADDPEPVSDGDFGASLHSKLDL 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,172,026
Number of extensions: 309460
Number of successful extensions: 652
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)