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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0539400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0445) R2 : 0.00442
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.133 (0.0938) R2dN8 : 0.00571 R2N8 : 0.00442
σ : 0.839
deviance : 322.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.45 0.82 3 0.299 0.215 2.15 0.85 -0.13 0.193 3.2 10 91 -- --
304.15 0.812 3 0.294 0.231 2.44 0.805 -- 0.205 3.56 10 166 -- --
306.56 0.815 2.99 0.35 0.252 2.45 -- 0.28 0.204 3.45 10 103 -- --
305.39 0.814 3 0.302 0.272 2.73 -- -- 0.2 5.05 10 166 -- --
309.43 0.819 3 0.303 -- 2.32 -- 0.704 0.203 -- 10 103 -- --
316.23 0.834 3.01 0.193 0.132 -- 1.16 -- 0.156 2.52 -- -- -- --
320.05 0.838 3.01 0.161 0.201 -- -- -- 0.147 5.38 -- -- -- --
309.12 0.819 3 0.299 -- 2.63 -- -- 0.198 -- 10.01 172 -- --
307.57 0.817 3 -- 0.269 2.67 -- -- 0.159 5.03 10.1 175 -- --
322.16 0.839 3.01 0.168 -- -- -- -- 0.152 -- -- -- -- --
320.73 0.838 3.01 -- 0.204 -- -- -- 0.129 5.35 -- -- -- --
311.36 0.822 3.01 -- -- 2.48 -- -- 0.161 -- 10.1 173 -- --
322.91 0.839 3.02 -- -- -- -- -- 0.133 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.59 temperature 20.0 90 < th dose independent rect. 22 1
2 296.15 temperature 20.0 90 < th dose dependent rect. 22 1
25 299.79 temperature 20.0 720 < th dose dependent rect. 22 2
38 300.36 wind 7.0 10 > th dose dependent rect. 16 2
40 300.44 atmosphere 1000.0 10 < th dose independent rect. 3 1
47 300.44 atmosphere 1000.0 10 < th dose dependent rect. 3 1
77 301.29 wind 9.0 10 > th dose independent rect. 15 3
81 301.42 wind 9.0 30 > th dose independent rect. 17 1
89 301.44 temperature 20.0 90 < th dose dependent rect. 6 18
90 301.49 wind 1.0 90 < th dose independent rect. 2 1
104 301.78 temperature 20.0 90 < th dose dependent rect. 14 10
163 302.11 temperature 20.0 10 < th dose dependent rect. 13 12
164 302.12 temperature 20.0 10 < th dose dependent rect. 15 10
183 302.27 wind 3.0 10 > th dose dependent rect. 24 1
209 302.43 wind 5.0 90 > th dose independent rect. 22 2
246 302.53 temperature 20.0 90 < th dose dependent rect. 10 14
274 302.67 wind 9.0 90 > th dose dependent rect. 16 19
280 302.73 wind 9.0 90 < th dose independent sin 14 NA
315 303.03 wind 9.0 90 > th dose independent rect. 15 19
317 303.08 temperature 20.0 10 < th dose dependent rect. 4 21
323 303.11 atmosphere 1015.0 720 < th dose independent rect. 23 16
327 303.13 wind 9.0 10 > th dose dependent sin 13 NA
403 303.50 temperature 20.0 90 > th dose independent rect. 17 9
409 303.54 temperature 20.0 90 < th dose independent rect. 13 11
419 303.55 temperature 20.0 90 < th dose independent rect. 6 18
464 303.72 wind 7.0 90 < th dose independent rect. 7 14
497 303.94 wind 7.0 10 < th dose independent rect. 8 14
501 304.03 wind 9.0 720 < th dose independent rect. 23 16
508 304.09 wind 1.0 90 < th dose dependent rect. 2 2
589 304.55 wind 9.0 90 > th dose independent sin 14 NA
592 304.56 wind 9.0 720 < th dose independent rect. 7 8
651 304.92 wind 9.0 90 > th dose dependent sin 17 NA
690 305.07 precipitation 0.1 720 > th dose independent rect. 22 1
693 305.07 precipitation 0.1 720 > th dose dependent rect. 22 1
713 305.12 wind 5.0 30 > th dose independent rect. 23 10
750 305.29 atmosphere 995.0 720 > th dose independent rect. 13 16
778 305.40 humidity 80.0 720 < th dose independent rect. 24 1
782 305.40 humidity 80.0 720 < th dose dependent rect. 24 1
788 305.45 atmosphere 995.0 720 > th dose independent rect. 17 8
799 305.46 atmosphere 995.0 720 > th dose independent rect. 1 16
800 305.46 wind 1.0 90 < th dose independent rect. 11 17
806 305.47 wind 1.0 90 < th dose dependent rect. 11 17
826 305.57 temperature 25.0 30 > th dose independent rect. 8 21
835 305.62 wind 9.0 90 > th dose dependent rect. 9 9
843 305.63 wind 1.0 90 < th dose independent rect. 7 21
868 305.67 wind 9.0 10 < th dose independent sin 14 NA
871 305.67 temperature 20.0 90 < th dose dependent sin 15 NA
888 305.71 wind 1.0 10 < th dose independent rect. 6 22
893 305.72 precipitation 0.1 90 > th dose independent rect. 23 2
895 305.72 wind 1.0 10 < th dose independent rect. 13 15
897 305.72 precipitation 0.1 90 > th dose dependent rect. 23 2
899 305.73 wind 1.0 90 < th dose dependent rect. 22 1
915 305.75 wind 9.0 720 < th dose dependent rect. 13 1
928 305.77 temperature 15.0 30 > th dose dependent rect. 18 8
940 305.83 temperature 20.0 90 < th dose independent rect. 22 12
952 305.85 temperature 15.0 10 > th dose dependent rect. 8 18
996 305.95 wind 1.0 90 < th dose dependent rect. 7 21
1000 305.97 wind 1.0 90 > th dose independent rect. 24 23