BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0539400 Os09g0539400|Os09g0539400
         (414 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20980.1  | chr2:9011654-9013856 REVERSE LENGTH=397            278   5e-75

>AT2G20980.1 | chr2:9011654-9013856 REVERSE LENGTH=397
          Length = 396

 Score =  278 bits (710), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 138/290 (47%), Positives = 193/290 (66%), Gaps = 5/290 (1%)

Query: 51  GGTDMSVFRDAVKDYLDATPAAVA-TSLPKGKRPPKSTETIVDAHSGLRIRSLTASPLEI 109
           G +D+S FR  V+D +D  P  +A  + PKG     S    ++  SGLRIR+   SP EI
Sbjct: 43  GHSDLSDFRSVVQDCIDYNPKPIAKNTKPKGSN--NSNTNDIEKFSGLRIRNQLLSPAEI 100

Query: 110 TNRFADIRFVRISAIRNLAGGDSFSGCWATAGVVLDKGAPRVSAQGKEYSIWKMGALDDA 169
           ++ F+DIRFVR+  I+NL  GD  SGCWAT GV+ +KG P+ S+ G+ Y IWK+G+L++ 
Sbjct: 101 SDLFSDIRFVRLPTIKNLLMGDKLSGCWATMGVITEKGQPKTSSIGQAYGIWKIGSLNEN 160

Query: 170 DVSVFLXXXXXXXXXXXXXXXXXXLFNGNVRMDNGGRGFSVSVASVGQMMKMGVSADFGI 229
           +VS+FL                  LFN ++R DNGGR FS+SV S  QM+K+GVSAD+G+
Sbjct: 161 NVSLFLFGDAYKKNETEKAGTVFGLFNCSLRKDNGGREFSLSVNSAKQMVKLGVSADYGV 220

Query: 230 CKGKRKDGMGCTMAINKRKGSYCKFHSSKSSQKYSTGRVELKGGNFKFASK-LRSEGIYM 288
           C  KRKDG  CT  +NKR+G++CK H   +S K++T R ELKGGN + A + L+S+GIY 
Sbjct: 221 CTAKRKDGTTCTSVVNKRQGAFCKIHKLNASDKFATMRTELKGGNLRTAFRDLKSQGIYT 280

Query: 289 VN-PLERSNSRNPLQPVKVMSIDGLKRALSNADRVTAKSQSQGIRFLSHV 337
           V  P +RS ++   QPV+V+S++GL++ALS AD+VT    SQGIRFL+ +
Sbjct: 281 VEPPADRSGNKKTTQPVRVLSVEGLRKALSGADKVTPNVHSQGIRFLNEM 330



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,803,126
Number of extensions: 258198
Number of successful extensions: 565
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)