BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0539400 Os09g0539400|Os09g0539400
         (414 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0539400  Conserved hypothetical protein                      648   0.0  

>Os09g0539400 Conserved hypothetical protein
          Length = 414

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/365 (88%), Positives = 324/365 (88%)

Query: 20  GGEAVLETXXXXXXXXXXXXXXXXXXXXXXXGGTDMSVFRDAVKDYLDATPAAVATSLPK 79
           GGEAVLET                       GGTDMSVFRDAVKDYLDATPAAVATSLPK
Sbjct: 20  GGEAVLETPPSSPRRDAATAAAFTPPRAVRPGGTDMSVFRDAVKDYLDATPAAVATSLPK 79

Query: 80  GKRPPKSTETIVDAHSGLRIRSLTASPLEITNRFADIRFVRISAIRNLAGGDSFSGCWAT 139
           GKRPPKSTETIVDAHSGLRIRSLTASPLEITNRFADIRFVRISAIRNLAGGDSFSGCWAT
Sbjct: 80  GKRPPKSTETIVDAHSGLRIRSLTASPLEITNRFADIRFVRISAIRNLAGGDSFSGCWAT 139

Query: 140 AGVVLDKGAPRVSAQGKEYSIWKMGALDDADVSVFLXXXXXXXXXXXXXXXXXXLFNGNV 199
           AGVVLDKGAPRVSAQGKEYSIWKMGALDDADVSVFL                  LFNGNV
Sbjct: 140 AGVVLDKGAPRVSAQGKEYSIWKMGALDDADVSVFLFGDAHAHHSGAAVGAVFALFNGNV 199

Query: 200 RMDNGGRGFSVSVASVGQMMKMGVSADFGICKGKRKDGMGCTMAINKRKGSYCKFHSSKS 259
           RMDNGGRGFSVSVASVGQMMKMGVSADFGICKGKRKDGMGCTMAINKRKGSYCKFHSSKS
Sbjct: 200 RMDNGGRGFSVSVASVGQMMKMGVSADFGICKGKRKDGMGCTMAINKRKGSYCKFHSSKS 259

Query: 260 SQKYSTGRVELKGGNFKFASKLRSEGIYMVNPLERSNSRNPLQPVKVMSIDGLKRALSNA 319
           SQKYSTGRVELKGGNFKFASKLRSEGIYMVNPLERSNSRNPLQPVKVMSIDGLKRALSNA
Sbjct: 260 SQKYSTGRVELKGGNFKFASKLRSEGIYMVNPLERSNSRNPLQPVKVMSIDGLKRALSNA 319

Query: 320 DRVTAKSQSQGIRFLSHVTGNIESNLSSNGSTNPQTSRFSSNKRSTSCSTKSMPKPGLQK 379
           DRVTAKSQSQGIRFLSHVTGNIESNLSSNGSTNPQTSRFSSNKRSTSCSTKSMPKPGLQK
Sbjct: 320 DRVTAKSQSQGIRFLSHVTGNIESNLSSNGSTNPQTSRFSSNKRSTSCSTKSMPKPGLQK 379

Query: 380 QEQDN 384
           QEQDN
Sbjct: 380 QEQDN 384



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,860,635
Number of extensions: 412346
Number of successful extensions: 960
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)