FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0538500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Male sterility MS5.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0327) R2 : 0.019
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.204 (0.0688) R2dN8 : 0.0245 R2N8 : 0.019
σ : 0.615
deviance : 173.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.09 0.574 3.1 -0.424 0.477 0.0352 -1.43 -1.27 0.146 6.43 35.01 97 -- --
151.79 0.578 3.1 -0.423 0.48 -0.0857 -1.53 -- 0.143 5.72 35.01 97 -- --
154.17 0.578 3.1 -0.43 0.477 0.049 -- -1.14 0.146 6.52 35.1 99 -- --
156.18 0.582 3.09 -0.47 0.472 0.349 -- -- 0.142 7.07 49.27 68 -- --
165.68 0.599 3.1 -0.423 -- 0.084 -- -1.19 0.167 -- 35.09 100 -- --
152.06 0.578 3.1 -0.42 0.477 -- -1.52 -- 0.141 5.85 -- -- -- --
157.37 0.587 3.09 -0.429 0.475 -- -- -- 0.148 6.45 -- -- -- --
157.7 0.585 3.09 -0.421 -- 0.577 -- -- 0.115 -- 0.01044 775 -- --
161.58 0.592 3.08 -- 0.472 0.262 -- -- 0.193 6.82 52.05 47 -- --
169.1 0.608 3.1 -0.417 -- -- -- -- 0.158 -- -- -- -- --
162.22 0.596 3.08 -- 0.469 -- -- -- 0.196 6.5 -- -- -- --
160.66 0.59 3.09 -- -- 0.627 -- -- 0.21 -- 0.007734 772 -- --
173.68 0.615 3.09 -- -- -- -- -- 0.204 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.57 temperature 25 30 > th dose dependent rect. 6 1
3 137.49 wind 3 30 > th dose dependent rect. 6 1
4 137.99 atmosphere 1010 30 < th dose independent rect. 6 1
5 138.13 atmosphere 1010 30 < th dose dependent rect. 6 1
6 138.60 radiation 10 30 < th dose independent rect. 6 1
10 139.97 humidity 90 30 < th dose independent rect. 2 7
12 140.55 wind 3 30 > th dose independent rect. 6 1
14 141.13 temperature 20 90 < th dose dependent rect. 1 4
17 141.75 temperature 20 270 < th dose independent rect. 24 5
21 142.05 humidity 90 90 < th dose dependent rect. 2 5
23 142.07 temperature 20 10 < th dose dependent rect. 24 6
52 142.61 humidity 90 270 < th dose dependent rect. 3 2
58 142.80 temperature 20 270 < th dose independent rect. 1 1
59 142.81 atmosphere 1005 10 > th dose independent rect. 5 4
67 142.89 temperature 20 10 < th dose independent rect. 24 6
70 142.91 humidity 90 270 < th dose independent rect. 3 1
74 142.97 atmosphere 1000 30 > th dose dependent rect. 3 6
89 143.17 humidity 90 30 < th dose dependent rect. 1 8
97 143.26 temperature 25 30 > th dose dependent rect. 2 5
99 143.28 atmosphere 1000 30 > th dose dependent rect. 1 8
102 143.32 humidity 90 30 < th dose independent rect. 5 4
124 143.57 atmosphere 1000 10 > th dose dependent rect. 5 4
125 143.63 humidity 80 270 < th dose independent rect. 24 6
132 143.71 humidity 80 270 < th dose independent rect. 1 2
139 143.71 humidity 80 270 < th dose dependent rect. 1 2
145 143.71 temperature 15 90 > th dose dependent rect. 21 8
158 143.82 atmosphere 1005 30 > th dose independent rect. 3 6
161 143.83 temperature 20 90 < th dose dependent rect. 3 2
167 143.85 temperature 20 270 > th dose independent rect. 21 6
174 143.89 temperature 20 10 > th dose dependent rect. 23 7
175 143.90 temperature 20 90 > th dose independent rect. 21 9
202 144.00 temperature 25 90 > th dose independent rect. 5 2
204 144.01 temperature 20 270 < th dose dependent rect. 1 1
213 144.11 humidity 90 30 < th dose dependent rect. 6 1
233 144.27 radiation 1 10 > th dose dependent rect. 6 1
245 144.35 wind 1 10 > th dose independent rect. 1 8
260 144.47 humidity 90 30 < th dose independent rect. 2 19
262 144.47 humidity 90 10 < th dose dependent rect. 5 4
283 144.60 radiation 10 30 < th dose independent rect. 21 9
285 144.61 radiation 10 30 < th dose dependent rect. 21 9
311 144.77 radiation 1 30 > th dose dependent rect. 5 4
328 144.82 atmosphere 1005 270 > th dose independent rect. 5 1
342 144.86 temperature 20 90 < th dose independent rect. 3 2
366 144.94 radiation 10 30 < th dose dependent rect. 21 15
372 144.96 radiation 10 30 < th dose dependent rect. 21 13
411 145.12 atmosphere 1000 270 > th dose dependent rect. 5 1
419 145.15 atmosphere 1000 270 > th dose dependent rect. 3 3
452 145.32 radiation 1 90 > th dose independent rect. 4 5
521 145.45 radiation 1 90 < th dose independent rect. 21 15
549 145.54 radiation 20 30 < th dose dependent rect. 6 1
566 145.58 radiation 10 30 < th dose dependent sin 11 NA
582 145.62 humidity 50 43200 < th dose dependent rect. 8 1
586 145.63 temperature 15 14400 < th dose dependent rect. 7 4
595 145.66 temperature 15 14400 < th dose dependent rect. 9 1
656 145.78 humidity 50 43200 < th dose dependent rect. 6 3
674 145.83 humidity 80 1440 > th dose independent rect. 3 1
681 145.85 atmosphere 995 10 > th dose dependent rect. 17 16
689 145.87 wind 5 90 < th dose independent rect. 1 8
694 145.88 humidity 90 30 < th dose independent rect. 5 16
726 145.92 wind 5 90 < th dose independent rect. 19 14
781 146.04 atmosphere 1010 30 < th dose independent rect. 6 3
843 146.15 humidity 80 1440 > th dose independent rect. 24 4
857 146.18 wind 5 90 < th dose independent rect. 5 4
870 146.20 atmosphere 1000 10 > th dose independent rect. 9 20
895 146.23 radiation 40 90 < th dose independent rect. 5 4
917 146.27 wind 5 90 < th dose independent rect. 3 6
921 146.28 radiation 1 270 > th dose independent rect. 4 2
941 146.30 humidity 60 90 > th dose independent rect. 5 4
948 146.31 atmosphere 1000 30 > th dose independent rect. 9 18
955 146.32 wind 9 14400 > th dose independent rect. 24 1
956 146.32 temperature 15 14400 < th dose independent rect. 7 1
961 146.32 temperature 10 43200 < th dose independent rect. 20 1
962 146.32 humidity 60 43200 < th dose independent rect. 2 1
992 146.32 wind 9 14400 > th dose dependent rect. 24 1
998 146.32 temperature 10 43200 < th dose dependent rect. 20 1
999 146.32 humidity 60 43200 < th dose dependent rect. 2 1