Os09g0536000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exodeoxyribonuclease III xth family protein.
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Os09g0536000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exodeoxyribonuclease III xth family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.93 | 0.235 | 9.54 | -0.527 | 0.0388 | -0.73 | 0.0997 | 0.965 | -0.0952 | 2.99 | 29.14 | 98 | -- | -- |
| 25.73 | 0.236 | 9.53 | -0.357 | 0.00255 | -0.753 | -0.368 | -- | -0.0657 | 14.4 | 26.43 | 98 | -- | -- |
| 24.95 | 0.233 | 9.55 | -0.543 | 0.0402 | -0.727 | -- | 1.05 | -0.0987 | 3.68 | 29.17 | 103 | -- | -- |
| 25.93 | 0.237 | 9.52 | -0.371 | 0.0573 | -0.741 | -- | -- | -0.0493 | 14.8 | 25.19 | 182 | -- | -- |
| 25.01 | 0.233 | 9.55 | -0.54 | -- | -0.704 | -- | 1.04 | -0.0946 | -- | 28.78 | 100 | -- | -- |
| 33.55 | 0.272 | 9.49 | -0.172 | 0.189 | -- | -0.331 | -- | 0.101 | 14.7 | -- | -- | -- | -- |
| 33.93 | 0.273 | 9.49 | -0.18 | 0.188 | -- | -- | -- | 0.0992 | 14.8 | -- | -- | -- | -- |
| 26.07 | 0.238 | 9.53 | -0.376 | -- | -0.769 | -- | -- | -0.0653 | -- | 25.74 | 174 | -- | -- |
| 29.17 | 0.252 | 9.51 | -- | 0.0745 | -0.588 | -- | -- | -0.000554 | 14.4 | 25.7 | 170 | -- | -- |
| 35.98 | 0.28 | 9.49 | -0.188 | -- | -- | -- | -- | 0.0944 | -- | -- | -- | -- | -- |
| 34.79 | 0.276 | 9.49 | -- | 0.192 | -- | -- | -- | 0.119 | 14.8 | -- | -- | -- | -- |
| 29.44 | 0.253 | 9.52 | -- | -- | -0.622 | -- | -- | -0.00408 | -- | 26.53 | 126 | -- | -- |
| 36.92 | 0.284 | 9.49 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 2 | 24.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 8 | 24.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 10 | 24.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 13 | 24.61 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 17 | 24.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 20 | 24.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 22 | 24.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 23 | 24.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 47 | 24.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 53 | 25.01 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 54 | 25.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 55 | 25.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 58 | 25.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 72 | 25.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 73 | 25.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 80 | 25.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 186 | 25.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 198 | 25.44 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 208 | 25.47 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 239 | 25.54 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 350 | 25.79 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 22 |
| 389 | 25.92 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 392 | 25.93 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 437 | 26.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 438 | 26.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 526 | 26.29 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 19 |
| 635 | 26.47 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 22 |
| 777 | 26.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 936 | 26.84 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 8 | 21 |