BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0536000 Os09g0536000|AK103074
         (619 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0536000  Exodeoxyribonuclease III xth family protein        1231   0.0  

>Os09g0536000 Exodeoxyribonuclease III xth family protein
          Length = 619

 Score = 1231 bits (3185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/619 (95%), Positives = 591/619 (95%)

Query: 1   MVKIVTYNVNGLRPRVAQHGSXXXXXXXXXXXIICFQETKLSRQDLSGDVIMAEGYEAFI 60
           MVKIVTYNVNGLRPRVAQHGS           IICFQETKLSRQDLSGDVIMAEGYEAFI
Sbjct: 1   MVKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFI 60

Query: 61  SCNRSSKGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNSETIGDFVLVT 120
           SCNRSSKGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNSETIGDFVLVT
Sbjct: 61  SCNRSSKGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNSETIGDFVLVT 120

Query: 121 PXXXXXXXXXXXXXXXXXDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL 180
           P                 DNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL
Sbjct: 121 PVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL 180

Query: 181 QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF 240
           QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF
Sbjct: 181 QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF 240

Query: 241 RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI 300
           RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI
Sbjct: 241 RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI 300

Query: 301 MDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR 360
           MDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR
Sbjct: 301 MDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR 360

Query: 361 QQSIVSFLRKGMIYEHKDAMSMDRADESCCGGGLERKAIYKEEPPTDIAKFSKGNDLHSV 420
           QQSIVSFLRKGMIYEHKDAMSMDRADESCCGGGLERKAIYKEEPPTDIAKFSKGNDLHSV
Sbjct: 361 QQSIVSFLRKGMIYEHKDAMSMDRADESCCGGGLERKAIYKEEPPTDIAKFSKGNDLHSV 420

Query: 421 IKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKAVSNKKNKHNLSSQPTIKSFF 480
           IKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKAVSNKKNKHNLSSQPTIKSFF
Sbjct: 421 IKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKAVSNKKNKHNLSSQPTIKSFF 480

Query: 481 QQPKSKPGDSSTNSIVTPPDTLHGMDELHDPKNDCLPESIQCTTPATEDQGNSDVPCSLS 540
           QQPKSKPGDSSTNSIVTPPDTLHGMDELHDPKNDCLPESIQCTTPATEDQGNSDVPCSLS
Sbjct: 481 QQPKSKPGDSSTNSIVTPPDTLHGMDELHDPKNDCLPESIQCTTPATEDQGNSDVPCSLS 540

Query: 541 TDKCNEATLEWQRIQQRMKMTLPLCKGHHEPCIPRSVKKGSNIGRLFYVCARAQGPASNQ 600
           TDKCNEATLEWQRIQQRMKMTLPLCKGHHEPCIPRSVKKGSNIGRLFYVCARAQGPASNQ
Sbjct: 541 TDKCNEATLEWQRIQQRMKMTLPLCKGHHEPCIPRSVKKGSNIGRLFYVCARAQGPASNQ 600

Query: 601 EANCGHFQWATVKSKEKRR 619
           EANCGHFQWATVKSKEKRR
Sbjct: 601 EANCGHFQWATVKSKEKRR 619



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,522,200
Number of extensions: 904999
Number of successful extensions: 1908
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1907
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 512
Effective length of database: 11,448,903
Effective search space: 5861838336
Effective search space used: 5861838336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)