Os09g0527500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MEG5.
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Os09g0527500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MEG5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.24 | 0.574 | 5.69 | -0.965 | 1.08 | 2.04 | -0.184 | -8.87 | -0.828 | 22.1 | 30 | 1406 | -- | -- |
| 163.26 | 0.595 | 5.8 | -2.63 | 1.12 | 1.22 | 0.232 | -- | -0.415 | 22.1 | 25.8 | 8182 | -- | -- |
| 149.38 | 0.569 | 5.7 | -0.967 | 1.08 | 2.03 | -- | -8.83 | -0.828 | 22 | 29.99 | 1405 | -- | -- |
| 162.62 | 0.594 | 5.8 | -2.63 | 1.1 | 1.22 | -- | -- | -0.382 | 22 | 25.83 | 8309 | -- | -- |
| 217.31 | 0.687 | 5.67 | -1.11 | -- | 2.04 | -- | -8.62 | -0.747 | -- | 29.87 | 1492 | -- | -- |
| 219.3 | 0.694 | 5.9 | -3.24 | 0.998 | -- | -0.194 | -- | -0.817 | 21.7 | -- | -- | -- | -- |
| 219.44 | 0.694 | 5.9 | -3.23 | 1 | -- | -- | -- | -0.816 | 21.7 | -- | -- | -- | -- |
| 226.6 | 0.701 | 5.77 | -2.64 | -- | 1.16 | -- | -- | -0.387 | -- | 25.8 | 8686 | -- | -- |
| 166.78 | 0.601 | 5.59 | -- | 1.07 | 2.61 | -- | -- | 0.371 | 22.3 | 21 | 41564 | -- | -- |
| 278.86 | 0.78 | 5.87 | -3.22 | -- | -- | -- | -- | -0.818 | -- | -- | -- | -- | -- |
| 495.11 | 1.04 | 5.81 | -- | 0.994 | -- | -- | -- | -0.456 | 21.5 | -- | -- | -- | -- |
| 229.33 | 0.705 | 5.61 | -- | -- | 2.63 | -- | -- | 0.388 | -- | 21.03 | 39047 | -- | -- |
| 553.2 | 1.1 | 5.79 | -- | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 3 | 148.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 4 | 148.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 6 | 148.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 10 | 149.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 17 | 149.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 22 | 149.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 25 | 149.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 32 | 149.37 | temperature | 30 | 1440 | < th | dose independent | sin | 3 | NA |
| 36 | 149.44 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 55 | 149.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 57 | 149.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 60 | 149.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 62 | 149.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 64 | 149.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 74 | 149.53 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 75 | 149.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 185 | 149.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 191 | 149.88 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 220 | 150.00 | temperature | 30 | 1440 | > th | dose independent | sin | 2 | NA |
| 223 | 150.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 242 | 150.03 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 392 | 150.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 430 | 150.65 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 433 | 150.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 561 | 151.12 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 582 | 151.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 597 | 151.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 706 | 151.80 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 864 | 152.58 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 877 | 152.64 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 886 | 152.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 890 | 152.80 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 892 | 152.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 895 | 152.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 898 | 152.86 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 951 | 153.06 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 964 | 153.18 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 983 | 153.21 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 985 | 153.25 | temperature | 30 | 1440 | > th | dose dependent | sin | 5 | NA |
| 991 | 153.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |