BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0527500 Os09g0527500|AK110546
         (235 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76940.1  | chr1:28902707-28904085 REVERSE LENGTH=234          112   1e-25
AT1G21320.1  | chr1:7462834-7465200 REVERSE LENGTH=422            104   5e-23

>AT1G76940.1 | chr1:28902707-28904085 REVERSE LENGTH=234
          Length = 233

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 136 SRTLYVEGLPSNCTKREVAHIFRPFSGFREVRLVNKEIRHA-GSCNLLCFVDFSSPPEAR 194
           S TLYVEGLPSNC++REVAHIFRPF G+REVRLV K+ +H  G   +LCFVDF++P  A 
Sbjct: 135 SNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAA 194

Query: 195 AALETLQGYKFDEHDHESSNLRIQFS 220
            AL  LQGY+ DE++ +S  LR+QFS
Sbjct: 195 TALSALQGYRMDENESDSKFLRLQFS 220



>AT1G21320.1 | chr1:7462834-7465200 REVERSE LENGTH=422
          Length = 421

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 63/85 (74%), Gaps = 1/85 (1%)

Query: 136 SRTLYVEGLPSNCTKREVAHIFRPFSGFREVRLVNKEIRH-AGSCNLLCFVDFSSPPEAR 194
           S TLYVEGLPSNC++REV+HIFRPF G+REVRLV ++ +H +G   +LCFVDF +   A 
Sbjct: 322 SNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAA 381

Query: 195 AALETLQGYKFDEHDHESSNLRIQF 219
            AL  LQ Y+ DE + +S  LR+QF
Sbjct: 382 TALSALQDYRMDEDEPDSKILRLQF 406



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,674,782
Number of extensions: 134757
Number of successful extensions: 436
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 2
Length of query: 235
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 140
Effective length of database: 8,502,049
Effective search space: 1190286860
Effective search space used: 1190286860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)