Os09g0512200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AMP-binding protein.
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Os09g0512200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AMP-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.32 | 0.586 | 8.18 | -2.14 | 0.67 | 2.36 | 0.495 | -0.72 | -0.0464 | 0.162 | 14.99 | 10 | 8.97 | 20 |
| 155.88 | 0.581 | 8.17 | -2.07 | 0.642 | 2.34 | 0.621 | -- | -0.0211 | 0.314 | 14.5 | 11 | 8.95 | 20 |
| 156.18 | 0.582 | 8.18 | -2.17 | 0.659 | 2.36 | -- | -0.984 | -0.0431 | 0.149 | 14.48 | 10 | 8.96 | 20 |
| 157.63 | 0.585 | 8.17 | -2.07 | 0.644 | 2.32 | -- | -- | -0.0113 | 0.143 | 14.5 | 11 | 8.95 | 20 |
| 168.49 | 0.605 | 8.17 | -2.01 | -- | 2.25 | -- | -0.832 | -0.00994 | -- | 9.954 | 111 | 8.62 | 19.8 |
| 249.56 | 0.741 | 8.15 | -1.65 | 1.1 | -- | -0.0569 | -- | 0.139 | 18.8 | -- | -- | -- | -- |
| 249.56 | 0.74 | 8.15 | -1.65 | 1.1 | -- | -- | -- | 0.138 | 18.8 | -- | -- | -- | -- |
| 168.81 | 0.605 | 8.15 | -2 | -- | 2.25 | -- | -- | 0.0677 | -- | 7.529 | 117 | 8.47 | 20 |
| 260.19 | 0.751 | 8.08 | -- | 0.281 | 1.87 | -- | -- | 0.347 | 23.7 | 3.888 | 86 | 8.75 | 19.5 |
| 313.28 | 0.827 | 8.13 | -1.68 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 321.49 | 0.839 | 8.11 | -- | 1.12 | -- | -- | -- | 0.322 | 18.7 | -- | -- | -- | -- |
| 262.76 | 0.755 | 8.07 | -- | -- | 1.87 | -- | -- | 0.328 | -- | -5.262 | 155 | 8.02 | 19.7 |
| 387.4 | 0.919 | 8.08 | -- | -- | -- | -- | -- | 0.303 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 2 | 158.78 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 5 | 160.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 8 | 160.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 12 | 161.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 73 | 169.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 87 | 170.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 122 | 173.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 126 | 173.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 128 | 174.01 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 148 | 174.85 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 158 | 175.23 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 159 | 175.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 167 | 175.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 175 | 175.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 178 | 176.02 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 191 | 176.55 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 216 | 177.41 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 21 |
| 219 | 177.49 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 15 |
| 220 | 177.51 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 270 | 178.62 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 19 |
| 290 | 179.03 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 304 | 179.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 354 | 180.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 372 | 180.75 | temperature | 25 | 30 | < th | dose dependent | sin | 0 | NA |
| 404 | 181.35 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 431 | 181.88 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 458 | 182.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 522 | 183.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 525 | 183.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 527 | 183.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 541 | 183.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 606 | 184.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 641 | 184.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 678 | 185.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 679 | 185.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 682 | 185.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 708 | 185.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 805 | 187.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 816 | 187.14 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 7 |