BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0512200 Os09g0512200|AK065469
         (65 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14070.1  | chr4:8112122-8118039 REVERSE LENGTH=728             70   3e-13
AT3G23790.1  | chr3:8575268-8581001 FORWARD LENGTH=723             63   2e-11

>AT4G14070.1 | chr4:8112122-8118039 REVERSE LENGTH=728
          Length = 727

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 40/54 (74%)

Query: 4   QGIVLLSNPVKPSFIVHMVNWLLARIVAALLWSLHNLAKKLVFKKIHSAIGIPK 57
           +G+ L      P +IV  V+WL AR++AALLW LH LAKKL++KKIHS+IGI K
Sbjct: 415 EGMCLTKEQKPPMYIVAFVDWLWARVIAALLWPLHMLAKKLIYKKIHSSIGISK 468



>AT3G23790.1 | chr3:8575268-8581001 FORWARD LENGTH=723
          Length = 722

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 38/54 (70%)

Query: 4   QGIVLLSNPVKPSFIVHMVNWLLARIVAALLWSLHNLAKKLVFKKIHSAIGIPK 57
           +G+ L  N   P +IV +V+WL AR+VA  LW LH LA+KLV +KI S+IGI K
Sbjct: 399 EGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIRSSIGITK 452



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,353,299
Number of extensions: 38150
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 65
Length of database: 11,106,569
Length adjustment: 38
Effective length of query: 27
Effective length of database: 10,064,761
Effective search space: 271748547
Effective search space used: 271748547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)