Os09g0509400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0509400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.6 | 0.555 | 6.27 | -1.35 | 0.682 | 1.77 | 1.75 | 0.197 | -0.173 | 15.3 | 11.74 | 1317 | -- | -- |
| 139.63 | 0.55 | 6.27 | -1.38 | 0.683 | 1.77 | 1.73 | -- | -0.182 | 15.3 | 13.11 | 1311 | -- | -- |
| 148.02 | 0.567 | 6.27 | -1.44 | 0.736 | 1.81 | -- | -0.465 | -0.193 | 14.3 | 13.91 | 1200 | -- | -- |
| 148.33 | 0.567 | 6.27 | -1.39 | 0.709 | 1.83 | -- | -- | -0.191 | 14.4 | 12.34 | 1228 | -- | -- |
| 161.1 | 0.594 | 6.24 | -1.06 | -- | 1.94 | -- | 0.93 | -0.0942 | -- | 5.281 | 1790 | -- | -- |
| 191.59 | 0.649 | 6.2 | -0.836 | 0.521 | -- | 1.81 | -- | 0.135 | 15.7 | -- | -- | -- | -- |
| 200.55 | 0.663 | 6.19 | -0.808 | 0.534 | -- | -- | -- | 0.145 | 14.8 | -- | -- | -- | -- |
| 161.83 | 0.595 | 6.25 | -1.19 | -- | 1.96 | -- | -- | -0.13 | -- | 12.34 | 1228 | -- | -- |
| 190.01 | 0.642 | 6.21 | -- | 0.712 | 1.26 | -- | -- | 0.0533 | 14.3 | 10.76 | 1133 | -- | -- |
| 217.1 | 0.688 | 6.19 | -0.831 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 217.76 | 0.69 | 6.17 | -- | 0.55 | -- | -- | -- | 0.235 | 14.8 | -- | -- | -- | -- |
| 195.01 | 0.65 | 6.21 | -- | -- | 1.59 | -- | -- | 0.0462 | -- | 10.38 | 248 | -- | -- |
| 235.3 | 0.716 | 6.17 | -- | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 4 | 125.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 18 | 129.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 23 | 129.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 67 | 132.23 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 70 | 132.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 73 | 132.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 78 | 133.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 86 | 133.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 124 | 134.92 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 19 |
| 138 | 135.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 154 | 135.68 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 19 |
| 185 | 136.23 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 220 | 136.68 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 242 | 137.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 280 | 137.56 | radiation | 20 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 292 | 137.69 | radiation | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 331 | 138.05 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 344 | 138.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 375 | 138.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 13 |
| 376 | 138.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 405 | 138.77 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 440 | 138.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 19 |
| 449 | 138.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 480 | 139.15 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 499 | 139.24 | radiation | 40 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 526 | 139.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 559 | 139.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 561 | 139.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 584 | 139.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 663 | 139.79 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 700 | 139.90 | radiation | 40 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 753 | 139.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 16 |
| 780 | 140.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 785 | 140.07 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 788 | 140.07 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 850 | 140.17 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 871 | 140.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 874 | 140.21 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 947 | 140.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |