BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0509400 Os09g0509400|AK100887
         (718 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0509400  Conserved hypothetical protein                     1416   0.0  
Os08g0536100  Conserved hypothetical protein                      629   e-180

>Os09g0509400 Conserved hypothetical protein
          Length = 718

 Score = 1416 bits (3665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/718 (95%), Positives = 687/718 (95%)

Query: 1   MGLPQVPAIKEEVLPTMSASLIVRPHFAGNSTCHLGKLPAESSSNRASPCSYISDFKRND 60
           MGLPQVPAIKEEVLPTMSASLIVRPHFAGNSTCHLGKLPAESSSNRASPCSYISDFKRND
Sbjct: 1   MGLPQVPAIKEEVLPTMSASLIVRPHFAGNSTCHLGKLPAESSSNRASPCSYISDFKRND 60

Query: 61  VLDSLNGFDGNFRASHAAYGPAGFQGLKPDTGDVGSRSGPKLGSNVQMPAMRIVGFESGF 120
           VLDSLNGFDGNFRASHAAYGPAGFQGLKPDTGDVGSRSGPKLGSNVQMPAMRIVGFESGF
Sbjct: 61  VLDSLNGFDGNFRASHAAYGPAGFQGLKPDTGDVGSRSGPKLGSNVQMPAMRIVGFESGF 120

Query: 121 ANSTGGPDTMVADNTDSPLVIDNCHSLIEQHGPHARKRVLSPLNNALPGHFRGDALNIGS 180
           ANSTGGPDTMVADNTDSPLVIDNCHSLIEQHGPHARKRVLSPLNNALPGHFRGDALNIGS
Sbjct: 121 ANSTGGPDTMVADNTDSPLVIDNCHSLIEQHGPHARKRVLSPLNNALPGHFRGDALNIGS 180

Query: 181 GDAKIQHSDCARRLYTSGFQDRKKANTAILDSFEAPTWPASRYSNWSTEQGVDKFSGSTF 240
           GDAKIQHSDCARRLYTSGFQDRKKANTAILDSFEAPTWPASRYSNWSTEQGVDKFSGSTF
Sbjct: 181 GDAKIQHSDCARRLYTSGFQDRKKANTAILDSFEAPTWPASRYSNWSTEQGVDKFSGSTF 240

Query: 241 TDGPLLESRESFPCSDHLEALESVAVPLAKLAHPPLLNLSPLGPTWMHGTNTVGSHGESL 300
           TDGPLLESRESFPCSDHLEALESVAVPLAKLAHPPLLNLSPLGPTWMHGTNTVGSHGESL
Sbjct: 241 TDGPLLESRESFPCSDHLEALESVAVPLAKLAHPPLLNLSPLGPTWMHGTNTVGSHGESL 300

Query: 301 RETEGSTCEGYSEGHGRSRIRDAFEKTNILHDDFDMRIPKKSSDRKSQNWGPESASVSPR 360
           RETEGSTCEGYSEGHGRSRIRDAFEKTNILHDDFDMRIPKKSSDRKSQNWGPESASVSPR
Sbjct: 301 RETEGSTCEGYSEGHGRSRIRDAFEKTNILHDDFDMRIPKKSSDRKSQNWGPESASVSPR 360

Query: 361 IGCIRSIGLLPVRRSLIGSFEESLLSGRYSCGKDNQNIDGFLAVLNVTGGNFSPPTQKLP 420
           IGCIRSIGLLPVRRSLIGSFEESLLSGRYSCGKDNQNIDGFLAVLNVTGGNFSPPTQKLP
Sbjct: 361 IGCIRSIGLLPVRRSLIGSFEESLLSGRYSCGKDNQNIDGFLAVLNVTGGNFSPPTQKLP 420

Query: 421 FSATSIDENSSLLYYSSIDLVGXXXXXXXXXXXXXXXXXNHDSRSAKSRLRIPVKGRVQL 480
           FSATSIDENSSLLYYSSIDLVG                 NHDSRSAKSRLRIPVKGRVQL
Sbjct: 421 FSATSIDENSSLLYYSSIDLVGRLPMSSSKSPKLKRSLSNHDSRSAKSRLRIPVKGRVQL 480

Query: 481 VVSNPEKTPLHTFFCNYDLSDMPAGTKTFMRQKVTLFPVSPSNQKKEGSKANETKVESVQ 540
           VVSNPEKTPLHTFFCNYDLSDMPAGTKTFMRQKVTLFPVSPSNQKKEGSKANETKVESVQ
Sbjct: 481 VVSNPEKTPLHTFFCNYDLSDMPAGTKTFMRQKVTLFPVSPSNQKKEGSKANETKVESVQ 540

Query: 541 FGSELRECGTLFSECCRPGQNCNLIDDSEKGGRKNMTCCSMECDIRESNDXXXXXXXXXX 600
           FGSELRECGTLFSECCRPGQNCNLIDDSEKGGRKNMTCCSMECDIRESND          
Sbjct: 541 FGSELRECGTLFSECCRPGQNCNLIDDSEKGGRKNMTCCSMECDIRESNDSSSLETSENG 600

Query: 601 XXXXVCCCQSDTFPLGEKKYCCRSSKINDPAGGALRYALHLRFLSPFAKKPSRSMQRSKS 660
               VCCCQSDTFPLGEKKYCCRSSKINDPAGGALRYALHLRFLSPFAKKPSRSMQRSKS
Sbjct: 601 SSTNVCCCQSDTFPLGEKKYCCRSSKINDPAGGALRYALHLRFLSPFAKKPSRSMQRSKS 660

Query: 661 DVSSEPYNHSSGPEEHRRFYLYNDVRVVFPQRHSDADEGELRVEHDFPADPKYFDISN 718
           DVSSEPYNHSSGPEEHRRFYLYNDVRVVFPQRHSDADEGELRVEHDFPADPKYFDISN
Sbjct: 661 DVSSEPYNHSSGPEEHRRFYLYNDVRVVFPQRHSDADEGELRVEHDFPADPKYFDISN 718



>Os08g0536100 Conserved hypothetical protein
          Length = 689

 Score =  629 bits (1623), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 384/726 (52%), Positives = 450/726 (61%), Gaps = 45/726 (6%)

Query: 1   MGLPQV-PAIKEEVLPTMSASLIVRPHFAGNSTCHLGKLPAESSSNRASPCSYISDFKRN 59
           MGLPQV PA  EE     S  +     F G   C L  L   SSS+R      I D  R 
Sbjct: 1   MGLPQVNPA--EEAPTPSSRPVSSPRSFEGVGACDLDGLLGGSSSSRVFEYPSIGDSDRK 58

Query: 60  DVLDSLNGFDGNFRASHAAYGPAGFQGLKPDTGDVGSRSGPKLGSNVQMPAMRIVGFESG 119
             LD  NG     R SH    PAG +GL+ D+ D  SRS  KL   V +P MR+VGFESG
Sbjct: 59  TALDIPNGSTEYSRDSHCFDRPAGLRGLRIDSRDADSRSSHKLDPTVHVPTMRVVGFESG 118

Query: 120 FANSTGGPDTMVADNTDSPLVIDNCHSLIEQHGPHARKRVLSPLNNALPGHFRGDALNIG 179
              S GG          + +  DNCH+  +QH   ARKR+LSPL N L   F GD LNI 
Sbjct: 119 ---SVGG---------SAIIETDNCHTPFDQHELQARKRLLSPLKNVLNRQFHGDILNIS 166

Query: 180 SGDAKIQHSDCARRLYTSGFQDRKKANTAILDSFEAPTWPASRYSNWSTEQGVDKFSGST 239
           +GDA+ + SD AR+L  S FQD KKANT +LDSFE   W  SR SN S E   +K + + 
Sbjct: 167 AGDARFELSDSARKLNISCFQDSKKANTGMLDSFEPQAWTNSRCSNGSPEWDANKINSNL 226

Query: 240 FTDGPLLESRESFPCSDHLEALESVAVPLAKLAHPPLLNLSPLGPTWMHGTNTVGSHGES 299
           FTDGPLL S+ES    DHL A        AKLAH PL         +M+ T   G+   +
Sbjct: 227 FTDGPLLGSKESLAYLDHLAAS-------AKLAHSPLSLSPLSP-KFMNRTKATGAQCRT 278

Query: 300 LRETEGSTCEGYSEGHGRS-RIRDAFEKTNILHDDFDMRIPKKSSDRKSQNWGPESASVS 358
           +R+ E    +   +G     R+    E+TNILHD++++  PK+SS R+ Q WGPES   S
Sbjct: 279 MRDIEHHFLDSREKGGPDGIRMLSVLEETNILHDEYNVMTPKRSSCRRYQIWGPESTPTS 338

Query: 359 PRIGCIRSIGLLPVRRSLIGSFEESLLSGRYSCGKDNQNIDGFLAVLNVTGGNFSPPTQK 418
           PR+G  RS+ L PVRRSL+GSFEESLLSGR S GKDNQ IDGFLAVLN+TGGNFSPPTQK
Sbjct: 339 PRVGYGRSLSL-PVRRSLVGSFEESLLSGRLSYGKDNQIIDGFLAVLNITGGNFSPPTQK 397

Query: 419 LPFSATSIDENSSLLYYSSIDLVGXXXXXXXXXXXXXXXXXNHDSRSAKSRLRIPVKGRV 478
           LPF+ TSIDE+SSLLYYSSIDL G                 N+DSRSAKSRLRIPVKGR+
Sbjct: 398 LPFAVTSIDEDSSLLYYSSIDLAGRSSATNCRSPKLERSLSNNDSRSAKSRLRIPVKGRI 457

Query: 479 QLVVSNPEKTPLHTFFCNYDLSDMPAGTKTFMRQKVTLFP-VSPSNQKKEGSKANET--- 534
           QLVVSNPEKTPLHTFFC+YDL+DMP+GTKTFMRQKVTL P +S SN  KEGS A +    
Sbjct: 458 QLVVSNPEKTPLHTFFCSYDLTDMPSGTKTFMRQKVTLSPTLSSSNPMKEGSNAGDINIG 517

Query: 535 -KVESVQFGSELRECGTLFSECCRPGQNCNLIDDSEKGGRKNMTCCSMECDIRESNDXXX 593
            K ESV  G E+ E         R    C+     EK    N   CS++ ++ ESN    
Sbjct: 518 PKAESVSCG-EVTE---------RESSECSSDGSEEKDA--NAKRCSLDSNMMESNKHNS 565

Query: 594 XXXXXXXXXXXVCCCQSDTFPLGEKKYCCRSSKINDPAGG-ALRYALHLRFLSPFAKKPS 652
                       CCCQ D   LG K YCC SS+IND +GG  +RYALHLRFL P +KK S
Sbjct: 566 PVNKKNNTDSDDCCCQMDN--LGGKNYCCASSRINDSSGGGVIRYALHLRFLCPSSKKSS 623

Query: 653 RSMQRSKSDVSSEPYNHSSGPEEHRRFYLYNDVRVVFPQRHSDADEGELRVEHDFPADPK 712
           +SM R KSD SS PY+ ++  E+ RRFYLYND+RVVFPQRHSDADEGELRVEHDFPADPK
Sbjct: 624 KSMLRCKSDPSSVPYDSNAAKEDDRRFYLYNDLRVVFPQRHSDADEGELRVEHDFPADPK 683

Query: 713 YFDISN 718
           YFDISN
Sbjct: 684 YFDISN 689



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,017,072
Number of extensions: 1136572
Number of successful extensions: 2452
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2443
Number of HSP's successfully gapped: 2
Length of query: 718
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 610
Effective length of database: 11,396,689
Effective search space: 6951980290
Effective search space used: 6951980290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)