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Os09g0505700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribulose-phosphate 3-epimerase, cytoplasmic isoform (EC 5.1.3.1) (Ribulose-5-phosphate-epimerase) (Cyt-RPEase) (RPEcyt) (Pentose-5- phosphate 3-epimerase) (PPE).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.47 | 0.264 | 12.8 | -0.838 | 0.434 | -0.679 | -0.0475 | 1 | -0.00785 | 23.4 | 23.49 | 1531 | -- | -- |
| 32.26 | 0.265 | 12.8 | -0.709 | 0.432 | -0.898 | -0.0466 | -- | 0.0257 | 23.4 | 22.56 | 1474 | -- | -- |
| 31.47 | 0.261 | 12.8 | -0.833 | 0.434 | -0.687 | -- | 0.991 | -0.00657 | 23.5 | 23.33 | 1530 | -- | -- |
| 32.27 | 0.265 | 12.8 | -0.701 | 0.426 | -0.897 | -- | -- | 0.029 | 23.4 | 22.56 | 1440 | -- | -- |
| 37.94 | 0.287 | 12.8 | -0.939 | -- | -0.849 | -- | 1.31 | -0.061 | -- | 30.19 | 904 | -- | -- |
| 40.2 | 0.297 | 12.8 | -0.452 | 0.436 | -- | -0.021 | -- | 0.164 | 23.6 | -- | -- | -- | -- |
| 40.2 | 0.297 | 12.8 | -0.452 | 0.436 | -- | -- | -- | 0.164 | 23.6 | -- | -- | -- | -- |
| 39.4 | 0.292 | 12.8 | -0.694 | -- | -0.887 | -- | -- | -0.0164 | -- | 29.1 | 888 | -- | -- |
| 42.78 | 0.306 | 12.8 | -- | 0.495 | -0.451 | -- | -- | 0.164 | 23.7 | 23.2 | 1314 | -- | -- |
| 52.13 | 0.337 | 12.8 | -0.44 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 45.58 | 0.316 | 12.8 | -- | 0.431 | -- | -- | -- | 0.214 | 23.5 | -- | -- | -- | -- |
| 50.57 | 0.331 | 12.8 | -- | -- | -0.601 | -- | -- | 0.114 | -- | 29.5 | 859 | -- | -- |
| 57.23 | 0.353 | 12.7 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 6 | 30.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 11 |
| 17 | 30.75 | humidity | 90 | 14400 | > th | dose dependent | sin | 9 | NA |
| 84 | 30.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 121 | 31.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 177 | 31.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 193 | 31.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 207 | 31.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 232 | 31.35 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 271 | 31.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 301 | 31.44 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 325 | 31.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 8 |
| 350 | 31.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 376 | 31.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 382 | 31.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 431 | 31.56 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 497 | 31.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 536 | 31.61 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 578 | 31.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 618 | 31.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 620 | 31.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 734 | 31.70 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 828 | 31.74 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 829 | 31.74 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 876 | 31.76 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 919 | 31.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 927 | 31.78 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 941 | 31.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 943 | 31.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 957 | 31.79 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 6 |
