BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0505700 Os09g0505700|AK069451
(228 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0505700 Ribulose-phosphate 3-epimerase, cytoplasmic is... 456 e-129
Os03g0169100 Ribulose-phosphate 3-epimerase, chloroplast pr... 159 1e-39
>Os09g0505700 Ribulose-phosphate 3-epimerase, cytoplasmic isoform (EC 5.1.3.1)
(Ribulose-5-phosphate-epimerase) (Cyt-RPEase) (RPEcyt)
(Pentose-5- phosphate 3-epimerase) (PPE)
Length = 228
Score = 456 bits (1173), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/228 (97%), Positives = 222/228 (97%)
Query: 1 MXXXXXXKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR 60
M KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR
Sbjct: 1 MAAAAAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLR 60
Query: 61 KHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSL 120
KHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSL
Sbjct: 61 KHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSL 120
Query: 121 RPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDG 180
RPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDG
Sbjct: 121 RPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDG 180
Query: 181 GLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
GLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS
Sbjct: 181 GLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
>Os03g0169100 Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1)
(Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E)
Length = 274
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 128/217 (58%), Gaps = 8/217 (3%)
Query: 9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLD 68
++PS+LS++F+ L + + G DW+H+D+MDG FVPN+TIG V+ +LR T LD
Sbjct: 53 VSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 112
Query: 69 CHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVE 127
HLM+ P V KAGA + H E S + + IK+ G + GV L P TP+
Sbjct: 113 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLT 172
Query: 128 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRK----KYPSLDIEVDGGLG 183
+ +++ V+LVL+M+V PGFGGQ F+ ++K+ LR+ K + IEVDGG+G
Sbjct: 173 AIDYVLDV---VDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVG 229
Query: 184 PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 220
P AGAN IVAGS++FGA + E I ++ S
Sbjct: 230 PKNAYKVIEAGANAIVAGSAVFGAPDYAEAIKGIKTS 266
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,507,324
Number of extensions: 312482
Number of successful extensions: 790
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)