BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0505700 Os09g0505700|AK069451
(228 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01850.1 | chr3:300428-301987 REVERSE LENGTH=226 386 e-108
AT1G63290.1 | chr1:23472095-23473590 REVERSE LENGTH=228 372 e-104
AT5G61410.1 | chr5:24684085-24685836 REVERSE LENGTH=282 160 6e-40
>AT3G01850.1 | chr3:300428-301987 REVERSE LENGTH=226
Length = 225
Score = 386 bits (991), Expect = e-108, Method: Compositional matrix adjust.
Identities = 177/218 (81%), Positives = 203/218 (93%)
Query: 8 KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYL 67
KIAPSMLSSDFANLAAEA+RM+ LGA+WLHMDIMDGHFVPNLTIGAPVI+SLRKHT AYL
Sbjct: 5 KIAPSMLSSDFANLAAEANRMIDLGANWLHMDIMDGHFVPNLTIGAPVIESLRKHTNAYL 64
Query: 68 DCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVE 127
DCHLMVTNP DYV +AKAGASGFTFH+EV++DNWQ+L++ IK+ GMRPGV+L+PGTPVE
Sbjct: 65 DCHLMVTNPMDYVAQMAKAGASGFTFHVEVAQDNWQQLVEKIKSTGMRPGVALKPGTPVE 124
Query: 128 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTI 187
+V+PLVE PVE+VLVMTVEPGFGGQKFMP+MM+KVRALR+KYP+LDI+VDGGLGPSTI
Sbjct: 125 QVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQKYPTLDIQVDGGLGPSTI 184
Query: 188 DVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQ 225
D AA+AGANCIVAGSS+FGA EPG+VIS LR SVE +Q
Sbjct: 185 DTAAAAGANCIVAGSSVFGAPEPGDVISLLRTSVEKAQ 222
>AT1G63290.1 | chr1:23472095-23473590 REVERSE LENGTH=228
Length = 227
Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/218 (81%), Positives = 201/218 (92%)
Query: 8 KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYL 67
KIAPSMLSSDFANLAAEA RM+ LGA+WLHMDIMDGHFV NLTIGAPVI+SLRKHT AYL
Sbjct: 7 KIAPSMLSSDFANLAAEAKRMIDLGANWLHMDIMDGHFVSNLTIGAPVIESLRKHTNAYL 66
Query: 68 DCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVE 127
DCHLMVTNP DYV+ +AKAGASGFTFH+EV+++NWQEL++ IKA GMRPGV+L+PGTPVE
Sbjct: 67 DCHLMVTNPMDYVDQMAKAGASGFTFHVEVAQENWQELVKKIKAAGMRPGVALKPGTPVE 126
Query: 128 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTI 187
+V+PLVE NPVE+VLVMTVEPGFGGQKFMP MM+KVRALR KYP+LDIEVDGGLGPSTI
Sbjct: 127 QVYPLVEGTNPVEMVLVMTVEPGFGGQKFMPSMMDKVRALRNKYPTLDIEVDGGLGPSTI 186
Query: 188 DVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQ 225
D AA+AGANCIVAGSS+FGA +PG+VIS LR SVE +Q
Sbjct: 187 DAAAAAGANCIVAGSSVFGAPKPGDVISLLRASVEKAQ 224
>AT5G61410.1 | chr5:24684085-24685836 REVERSE LENGTH=282
Length = 281
Score = 160 bits (404), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 129/217 (59%), Gaps = 8/217 (3%)
Query: 9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLD 68
++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR T LD
Sbjct: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
Query: 69 CHLMVTNPSDYVEPLAKAGASGFTFHIE-VSRDNWQELIQSIKAKGMRPGVSLRPGTPVE 127
HLM+ P V KAGA + H E S + + IK+ G + GV L PGTP+
Sbjct: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLS 179
Query: 128 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRK----KYPSLDIEVDGGLG 183
+ +++ V+LVL+M+V PGFGGQ F+ ++K+ LRK K + IEVDGG+
Sbjct: 180 AIEYVLDM---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEKGVNPWIEVDGGVT 236
Query: 184 PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 220
P+ AGAN +VAGS++FGA + E I ++ S
Sbjct: 237 PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKAS 273
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,633,357
Number of extensions: 185079
Number of successful extensions: 451
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 3
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)