Os09g0481800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nitrogen-fixing NifU, C-terminal domain containing protein.
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Os09g0481800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nitrogen-fixing NifU, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.08 | 0.446 | 13 | 0.0796 | 1.7 | -1 | -0.334 | -4.34 | -0.0613 | 23.2 | 0.7085 | 4295 | -- | -- |
| 97.54 | 0.46 | 13.2 | -0.695 | 1.78 | -0.403 | -0.119 | -- | -0.298 | 23.4 | 13.5 | 18957 | -- | -- |
| 88.92 | 0.439 | 13 | 0.00653 | 1.77 | -0.994 | -- | -4.08 | -0.0805 | 23.2 | 0.9004 | 5748 | -- | -- |
| 95.46 | 0.455 | 13.2 | -0.665 | 1.74 | -0.541 | -- | -- | -0.354 | 23.3 | 13.73 | 25806 | -- | -- |
| 136.17 | 0.546 | 13.1 | -0.552 | -- | 1.22 | -- | -0.238 | -0.0936 | -- | 2.173 | 6879 | -- | -- |
| 104.51 | 0.479 | 13.1 | -0.624 | 1.75 | -- | -0.113 | -- | -0.139 | 23.3 | -- | -- | -- | -- |
| 104.56 | 0.479 | 13.1 | -0.62 | 1.76 | -- | -- | -- | -0.139 | 23.3 | -- | -- | -- | -- |
| 132.86 | 0.539 | 13.1 | -0.596 | -- | 1.25 | -- | -- | -0.0647 | -- | 4.91 | 22712 | -- | -- |
| 102.76 | 0.472 | 13.2 | -- | 1.72 | -0.6 | -- | -- | -0.273 | 23.2 | 148.4 | 25685 | -- | -- |
| 297.23 | 0.806 | 13.1 | -0.576 | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
| 114.68 | 0.501 | 13.1 | -- | 1.75 | -- | -- | -- | -0.0697 | 23.2 | -- | -- | -- | -- |
| 142.23 | 0.557 | 13.1 | -- | -- | 1.25 | -- | -- | 0.00133 | -- | 4.91 | 22712 | -- | -- |
| 305.99 | 0.816 | 13.1 | -- | -- | -- | -- | -- | -0.0586 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.39 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 2 | 83.58 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 7 | 84.55 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 8 | 84.57 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 11 | 84.61 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 23 | 84.80 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 25 | 84.81 | humidity | 70 | 43200 | > th | dose dependent | sin | 14 | NA |
| 31 | 84.96 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 40 | 85.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 4 |
| 41 | 85.12 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 13 |
| 47 | 85.18 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 54 | 85.30 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 13 |
| 58 | 85.41 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 60 | 85.41 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 72 | 85.55 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 14 |
| 112 | 85.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 120 | 85.91 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 129 | 85.95 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 18 |
| 143 | 86.02 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 10 |
| 150 | 86.05 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 219 | 86.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 230 | 86.47 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 257 | 86.57 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 286 | 86.68 | wind | 1 | 14400 | > th | dose independent | sin | 19 | NA |
| 323 | 86.77 | wind | 1 | 14400 | < th | dose independent | sin | 19 | NA |
| 389 | 86.98 | humidity | 70 | 43200 | > th | dose dependent | no | NA | NA |
| 413 | 87.04 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 4 |
| 416 | 87.05 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 446 | 87.16 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 480 | 87.22 | humidity | 80 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 483 | 87.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 11 |
| 497 | 87.26 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 510 | 87.30 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 524 | 87.34 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 10 |
| 530 | 87.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 586 | 87.52 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 22 |
| 647 | 87.65 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 658 | 87.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 665 | 87.69 | humidity | 80 | 43200 | > th | dose independent | sin | 16 | NA |
| 698 | 87.78 | temperature | 25 | 720 | < th | dose independent | sin | 5 | NA |
| 718 | 87.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 766 | 87.91 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 835 | 88.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 847 | 88.05 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 866 | 88.07 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 871 | 88.07 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 20 |
| 872 | 88.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 921 | 88.12 | wind | 1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 945 | 88.16 | radiation | 1 | 14400 | < th | dose independent | sin | 0 | NA |
| 954 | 88.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 957 | 88.18 | humidity | 80 | 43200 | < th | dose independent | sin | 17 | NA |
| 975 | 88.21 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |