BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0481800 Os09g0481800|AK062669
         (154 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0481800  Nitrogen-fixing NifU, C-terminal domain contai...   232   7e-62

>Os09g0481800 Nitrogen-fixing NifU, C-terminal domain containing protein
          Length = 154

 Score =  232 bits (592), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 120/154 (77%), Positives = 120/154 (77%)

Query: 1   MALVTVHXXXXXXXXXXXXXXXXXXXCTRLRALSTVTGTRLSIRHQQXXXXXXXXXXXXX 60
           MALVTVH                   CTRLRALSTVTGTRLSIRHQQ             
Sbjct: 1   MALVTVHARLAAAASSASPPLRSAASCTRLRALSTVTGTRLSIRHQQRRRWRRPRRAAAI 60

Query: 61  XXSLDLNEDNVRLAIDEAKAELGQLFDTSVGITGQVDLAELDGPFVKLRLKGKFWHTRAT 120
             SLDLNEDNVRLAIDEAKAELGQLFDTSVGITGQVDLAELDGPFVKLRLKGKFWHTRAT
Sbjct: 61  AASLDLNEDNVRLAIDEAKAELGQLFDTSVGITGQVDLAELDGPFVKLRLKGKFWHTRAT 120

Query: 121 VLARIGNYLKNRIPEILEVEIEDEKQLDDSPAAF 154
           VLARIGNYLKNRIPEILEVEIEDEKQLDDSPAAF
Sbjct: 121 VLARIGNYLKNRIPEILEVEIEDEKQLDDSPAAF 154



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,386,440
Number of extensions: 107565
Number of successful extensions: 212
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)