BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0481800 Os09g0481800|AK062669
         (154 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33180.1  | chr2:14066479-14067314 FORWARD LENGTH=167          152   9e-38

>AT2G33180.1 | chr2:14066479-14067314 FORWARD LENGTH=167
          Length = 166

 Score =  152 bits (383), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 78/91 (85%)

Query: 64  LDLNEDNVRLAIDEAKAELGQLFDTSVGITGQVDLAELDGPFVKLRLKGKFWHTRATVLA 123
           LDL EDN+ L + EA+ EL QLFD+SVGITGQV+L ELDGPFV + L+GKFWHTRA VLA
Sbjct: 76  LDLTEDNIHLVLSEARIELAQLFDSSVGITGQVELVELDGPFVTISLRGKFWHTRAMVLA 135

Query: 124 RIGNYLKNRIPEILEVEIEDEKQLDDSPAAF 154
           R+GNYLK RIPEILEV IEDEKQLDDSPA F
Sbjct: 136 RLGNYLKQRIPEILEVNIEDEKQLDDSPANF 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,219,027
Number of extensions: 73035
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)