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Os09g0476100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0159) R2 : 0.489
β1 : 1.22 (0.0582) R2dD : 0.507 R2D : 0.475
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.104 (0.0339) R2dN8 : 0.0142 R2N8 : -0.0174
σ : 0.298
deviance : 40.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.83 0.243 11.6 1.33 0.254 1.29 0.124 1.39 0.201 4 0.4603 1433 -- --
27.38 0.244 11.6 1.45 0.268 0.973 0.0651 -- 0.21 3.58 0.56 1410 -- --
26.85 0.241 11.6 1.33 0.261 1.28 -- 1.34 0.199 3.98 0.4503 1428 -- --
27.36 0.244 11.6 1.45 0.279 0.978 -- -- 0.212 3.46 0.6392 1407 -- --
29.97 0.255 11.6 1.34 -- 1.29 -- 1.34 0.199 -- 0.46 1462 -- --
37.73 0.288 11.6 1.21 0.24 -- -0.0831 -- 0.0977 4.63 -- -- -- --
37.74 0.288 11.6 1.21 0.239 -- -- -- 0.0981 4.5 -- -- -- --
30.56 0.257 11.6 1.46 -- 0.991 -- -- 0.225 -- 0.6331 1465 -- --
74.69 0.403 11.7 -- 0.266 0.26 -- -- 0.0197 4.55 19.83 2951 -- --
40.79 0.298 11.7 1.22 -- -- -- -- 0.104 -- -- -- -- --
76.12 0.408 11.7 -- 0.262 -- -- -- -0.0363 4.39 -- -- -- --
70.45 0.391 11.7 -- -- 0.509 -- -- 0.101 -- 10 7865 -- --
79.8 0.417 11.7 -- -- -- -- -- -0.0305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.04 radiation 1.0 1440 < th dose dependent rect. 13 17
3 26.09 radiation 1.0 1440 < th dose dependent sin 16 NA
4 26.09 radiation 1.0 1440 < th dose dependent rect. 10 20
12 26.20 radiation 1.0 1440 < th dose dependent rect. 15 5
13 26.20 radiation 1.0 1440 < th dose dependent rect. 15 11
19 26.21 radiation 1.0 1440 < th dose dependent rect. 15 9
47 26.40 temperature 20.0 1440 > th dose dependent rect. 13 6
65 26.47 radiation 1.0 1440 < th dose dependent rect. 8 18
68 26.48 radiation 1.0 1440 < th dose dependent rect. 8 12
72 26.49 radiation 1.0 1440 < th dose dependent rect. 10 10
81 26.49 radiation 1.0 1440 < th dose dependent rect. 10 15
141 26.65 radiation 1.0 1440 > th dose independent rect. 13 17
151 26.70 radiation 1.0 1440 > th dose independent rect. 10 20
159 26.73 radiation 1.0 1440 < th dose independent rect. 13 17
170 26.78 radiation 1.0 1440 < th dose independent rect. 10 20
184 26.85 radiation 1.0 720 < th dose dependent rect. 5 14
197 26.92 radiation 1.0 1440 > th dose independent sin 16 NA
219 27.00 radiation 1.0 1440 > th dose independent rect. 14 5
245 27.04 radiation 1.0 1440 < th dose independent sin 16 NA
278 27.09 temperature 10.0 1440 > th dose dependent rect. 15 1
291 27.11 radiation 1.0 1440 < th dose independent rect. 14 6
301 27.12 radiation 1.0 1440 < th dose independent rect. 14 10
302 27.12 radiation 1.0 1440 < th dose independent rect. 14 12
350 27.20 radiation 1.0 1440 > th dose independent rect. 10 9
410 27.23 temperature 20.0 1440 > th dose dependent sin 19 NA
418 27.25 radiation 1.0 720 < th dose dependent rect. 20 23
419 27.26 humidity 90.0 43200 < th dose independent rect. 20 1
476 27.34 radiation 1.0 1440 < th dose independent rect. 10 10
477 27.34 radiation 1.0 1440 < th dose independent rect. 10 16
486 27.35 radiation 1.0 1440 < th dose independent rect. 10 14
567 27.44 temperature 30.0 1440 < th dose dependent rect. 15 4
570 27.44 radiation 1.0 1440 < th dose dependent rect. 4 16
571 27.44 radiation 1.0 1440 < th dose dependent rect. 23 21
580 27.45 radiation 1.0 1440 < th dose dependent rect. 1 19
594 27.45 radiation 1.0 1440 < th dose dependent rect. 1 23
600 27.46 radiation 1.0 1440 < th dose dependent no NA NA
662 27.49 wind 9.0 43200 > th dose independent rect. 19 2
736 27.61 radiation 10.0 14400 < th dose independent rect. 17 1
739 27.61 wind 9.0 43200 > th dose dependent rect. 19 4
748 27.62 radiation 10.0 14400 < th dose independent rect. 17 9
750 27.62 radiation 10.0 14400 < th dose independent rect. 17 12
759 27.63 wind 9.0 43200 < th dose independent rect. 19 2
761 27.63 radiation 10.0 14400 < th dose independent rect. 17 7
808 27.68 radiation 1.0 4320 > th dose independent rect. 17 1
811 27.68 temperature 30.0 1440 < th dose dependent rect. 17 1
853 27.76 temperature 25.0 1440 < th dose independent rect. 15 5
866 27.78 temperature 25.0 1440 > th dose independent rect. 15 5
874 27.78 temperature 20.0 720 > th dose dependent rect. 21 21
889 27.80 temperature 25.0 1440 < th dose independent rect. 14 8
899 27.81 atmosphere 1010.0 4320 < th dose independent rect. 9 2
943 27.85 precipitation 0.1 43200 > th dose dependent rect. 20 2
958 27.86 radiation 10.0 14400 > th dose dependent rect. 17 13
978 27.88 temperature 25.0 1440 > th dose independent rect. 11 11