BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0476100 Os09g0476100|AK099938
         (604 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0476100  RNA-binding region RNP-1 (RNA recognition moti...   219   5e-57
Os08g0490300  RNA-binding region RNP-1 (RNA recognition moti...   192   5e-49
Os04g0467300                                                       76   7e-14

>Os09g0476100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 604

 Score =  219 bits (558), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 185 TTLFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKE 244
           TTLFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKE
Sbjct: 185 TTLFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKE 244

Query: 245 GMNGHLFNGRPCVVAFASPHTVRRMGEAQVKNQQSMAQQNSGVQK 289
           GMNGHLFNGRPCVVAFASPHTVRRMGEAQVKNQQSMAQQNSGVQK
Sbjct: 245 GMNGHLFNGRPCVVAFASPHTVRRMGEAQVKNQQSMAQQNSGVQK 289




 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/221 (51%), Positives = 114/221 (51%)

Query: 384 FDPTGYXXXXXXXXXXXXXXXXXXXXXXXXXLMQPFPPVVAPHVNPAFFXXXXXXXXXXX 443
           FDPTGY                         LMQPFPPVVAPHVNPAFF           
Sbjct: 384 FDPTGYGAAMGRMGGGFGGFPGGPGAAPFPGLMQPFPPVVAPHVNPAFFGRGGGMGAGGV 443

Query: 444 XMWPDPSMGGWGGEEQSSYGDDAASDQQYGEGGSHGKERPPEREWSGASDRRREREKDLP 503
            MWPDPSMGGWGGEEQSSYGDDAASDQQYGEGGSHGKERPPEREWSGASDRRREREKDLP
Sbjct: 444 GMWPDPSMGGWGGEEQSSYGDDAASDQQYGEGGSHGKERPPEREWSGASDRRREREKDLP 503

Query: 504 PPPDWPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 563
           PPPDWP                                                      
Sbjct: 504 PPPDWPERRHRDERDAGRERERERDRDRERERDRDRERERERDRDRERERYRDDRDRHGD 563

Query: 564 XXXXGKRESDRNEDWDXXXXXXXXXXXXEVDHSKRRRMSPE 604
               GKRESDRNEDWD            EVDHSKRRRMSPE
Sbjct: 564 YHRHGKRESDRNEDWDRGRSSGRRSRSREVDHSKRRRMSPE 604



>Os08g0490300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 603

 Score =  192 bits (489), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 90/104 (86%), Positives = 95/104 (91%)

Query: 185 TTLFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKE 244
           TTLFVGELHWWTTDADLEAEL KYG VKEVRFFDEKASGKSKGYCQVDFYDP  A +CKE
Sbjct: 183 TTLFVGELHWWTTDADLEAELIKYGPVKEVRFFDEKASGKSKGYCQVDFYDPAVATACKE 242

Query: 245 GMNGHLFNGRPCVVAFASPHTVRRMGEAQVKNQQSMAQQNSGVQ 288
            MNGHLFNGRPCVVAFASP++VRRMGEAQVKNQQSM+ Q S +Q
Sbjct: 243 AMNGHLFNGRPCVVAFASPNSVRRMGEAQVKNQQSMSAQTSSMQ 286




 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/98 (77%), Positives = 81/98 (82%), Gaps = 4/98 (4%)

Query: 415 LMQPFPPVVAPHVNPAFFXXXXXXXXXXXXMWPDPSMGGWGGEEQSSYGDDAASDQQYGE 474
           LMQPFPPVVAPHVNPAFF            MWPDP+MGGWGGEEQSSYGDDAASDQQYGE
Sbjct: 406 LMQPFPPVVAPHVNPAFFGRGGMGAGGVG-MWPDPNMGGWGGEEQSSYGDDAASDQQYGE 464

Query: 475 GGSHGK---ERPPEREWSGASDRRREREKDLPPPPDWP 509
           GGSHGK   ERPP+REWSGAS+RRREREKD+PP  +WP
Sbjct: 465 GGSHGKERAERPPDREWSGASERRREREKDIPPAQEWP 502



>Os04g0467300 
          Length = 484

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 53/78 (67%)

Query: 185 TTLFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKE 244
           T +F+GEL +WTTDA++E  L+ +G +  + FF +K +GKS+G+C+ DF  P AAAS   
Sbjct: 124 TAVFIGELPYWTTDAEVEGALAPHGALHGLHFFTDKLTGKSRGFCRADFLSPDAAASAAA 183

Query: 245 GMNGHLFNGRPCVVAFAS 262
            ++G  F+GR CV + + 
Sbjct: 184 ALHGRTFDGRHCVASLSC 201



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,704,433
Number of extensions: 411068
Number of successful extensions: 1809
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1809
Number of HSP's successfully gapped: 5
Length of query: 604
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 497
Effective length of database: 11,448,903
Effective search space: 5690104791
Effective search space used: 5690104791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)