BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0476100 Os09g0476100|AK099938
(604 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55670.1 | chr5:22544669-22546801 REVERSE LENGTH=711 158 7e-39
AT1G13190.1 | chr1:4499633-4501354 FORWARD LENGTH=574 150 2e-36
AT3G08000.1 | chr3:2555034-2555829 REVERSE LENGTH=144 64 2e-10
AT4G13850.1 | chr4:8021314-8022065 FORWARD LENGTH=159 54 2e-07
AT2G21660.1 | chr2:9265477-9266316 REVERSE LENGTH=177 53 5e-07
AT3G26420.1 | chr3:9671953-9673055 FORWARD LENGTH=246 52 8e-07
AT4G39260.1 | chr4:18274166-18274958 REVERSE LENGTH=170 51 1e-06
>AT5G55670.1 | chr5:22544669-22546801 REVERSE LENGTH=711
Length = 710
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 70/92 (76%), Positives = 83/92 (90%)
Query: 187 LFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKEGM 246
LFVG+LHWWTTDA+LEAEL KYG VKEV+FFDEKASGKSKGYCQV+FYDP AA++CK+ +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 247 NGHLFNGRPCVVAFASPHTVRRMGEAQVKNQQ 278
NG+ FNGRPCVV +ASP++V+RMGEAQV Q
Sbjct: 296 NGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQ 327
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 60/131 (45%), Gaps = 37/131 (28%)
Query: 415 LMQPFPPV-------VAPHVNPAFFXXXXXXXXX------------XXXMWPDPSMGGWG 455
L+ FPPV VAPHVNPAFF MW DP+ GGWG
Sbjct: 464 LLSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPNAGVDGGHNMGMW-DPNSGGWG 522
Query: 456 GEE--------QSSYGDDAASDQQYGEGGSHG---------KERPPEREWSGASDRRRER 498
E +SSYG++AASD QYGE KER EREWSG+SDRR
Sbjct: 523 AGEDLGSGRAAESSYGEEAASDHQYGEVNHERGARPNPVKEKERASEREWSGSSDRRNRE 582
Query: 499 EKDLPPPPDWP 509
+KD D P
Sbjct: 583 DKDAGYERDIP 593
>AT1G13190.1 | chr1:4499633-4501354 FORWARD LENGTH=574
Length = 573
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 78/86 (90%)
Query: 185 TTLFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKE 244
T LFVGELHWWTTDA++E+ LS+YG+VKE++FFDE+ SGKSKGYCQV+FYD AAA+CKE
Sbjct: 202 TMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKE 261
Query: 245 GMNGHLFNGRPCVVAFASPHTVRRMG 270
GMNG +FNG+ CVVAFASP T+++MG
Sbjct: 262 GMNGFIFNGKACVVAFASPETLKQMG 287
>AT3G08000.1 | chr3:2555034-2555829 REVERSE LENGTH=144
Length = 143
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 187 LFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKEGM 246
LF+G L W + L+ S +G+V EVR +K SG+S+G+ VDF + G A S K+ M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 247 NGHLFNGRPCVVAFA------SPHTVRRMGEAQ 273
+G GRP ++FA P V R+G+++
Sbjct: 103 DGKGLLGRPLRISFALERVRGGPVVVPRLGKSK 135
>AT4G13850.1 | chr4:8021314-8022065 FORWARD LENGTH=159
Length = 158
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 185 TTLFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKE 244
T LF+G L W T DA L + +G V + + ++ +G+S+G+ V+F D GAA +
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 245 GMNGHLFNGR 254
M+G NGR
Sbjct: 95 EMDGKELNGR 104
>AT2G21660.1 | chr2:9265477-9266316 REVERSE LENGTH=177
Length = 176
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 188 FVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKEGMN 247
FVG L W T D LE ++YG V + + +++ +G+S+G+ V F D A EGMN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 248 GHLFNGRPCVV 258
G +GR V
Sbjct: 71 GQDLDGRSITV 81
>AT3G26420.1 | chr3:9671953-9673055 FORWARD LENGTH=246
Length = 245
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 187 LFVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKEGM 246
F+G L W T+D L KYG + E + +K SG+S+G+ + F + A M
Sbjct: 9 CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAM 68
Query: 247 NGHLFNGRPCVVAFASPH 264
NG +GR V A PH
Sbjct: 69 NGMDLDGRTITVDKAQPH 86
>AT4G39260.1 | chr4:18274166-18274958 REVERSE LENGTH=170
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 188 FVGELHWWTTDADLEAELSKYGQVKEVRFFDEKASGKSKGYCQVDFYDPGAAASCKEGMN 247
FVG L W T D DL+ S++G V + + +++ SG+S+G+ V F D A E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 248 GHLFNGRPCVV 258
G +GR V
Sbjct: 69 GKELDGRVITV 79
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.133 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,219,700
Number of extensions: 217960
Number of successful extensions: 835
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 8
Length of query: 604
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 500
Effective length of database: 8,255,305
Effective search space: 4127652500
Effective search space used: 4127652500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)