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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0472900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Blight-associated protein p12 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.02 (0.0767) R2 : 0.462
β1 : -4.15 (0.308) R2dD : 0.322 R2D : 0.3
β2 : 0.76 (0.167) R2dC : 0.0245 R2C : 0.0232
β3 : -2.2 (0.229) R2dE : 0.198 R2E : 0.185
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.7 (1.01) R2dD*E : 0.0409 R2D*E : -0.105
γ1 : -1 (0.198) R2dN8 : 0.0712 R2N8 : -0.144
σ : 1.31
deviance : 788.24
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_____
C
peak time of C : 13
E
wheather : humidity
threshold : 90.14
memory length : 4104
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23.4
open length of G : 1.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
788.15 1.32 5.02 -4.15 0.759 -2.2 -0.184 4.75 -1 13.1 90.12 4109 23.4 1.95
827.66 1.34 5.03 -3.43 0.727 -2.12 -0.108 -- -0.877 12.7 90 4102 23.6 1.78
788.24 1.31 5.02 -4.15 0.76 -2.2 -- 4.7 -1 13 90.14 4104 23.4 1.93
820.31 1.33 5.08 -3.46 0.708 -2.17 -- -- -0.802 12.7 90.13 4157 23.8 0.883
823.87 1.34 5.03 -4.21 -- -2.17 -- 4.83 -1.01 -- 90 4114 23.4 1.86
976.26 1.46 4.83 -3.89 0.769 -- 0.0501 -- 0.347 13.6 -- -- -- --
976.27 1.46 4.83 -3.89 0.769 -- -- -- 0.347 13.6 -- -- -- --
850.54 1.36 5.06 -3.48 -- -2.32 -- -- -0.705 -- 90.13 4704 23.7 0.9
1071.13 1.52 5.07 -- 0.854 -2.26 -- -- -0.575 13 91 4021 1 1.37
1012.36 1.49 4.84 -3.92 -- -- -- -- 0.33 -- -- -- -- --
1375.36 1.73 4.74 -- 0.839 -- -- -- 0.781 13.8 -- -- -- --
1079.71 1.53 5.04 -- -- -2.31 -- -- -0.539 -- 91.63 4233 1.28 0.533
1418.18 1.76 4.74 -- -- -- -- -- 0.766 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 799.98 radiation 40.0 43200 < th dose independent rect. 16 6
2 800.40 radiation 40.0 43200 < th dose independent rect. 16 4
4 802.24 radiation 40.0 43200 < th dose independent rect. 16 8
5 802.30 radiation 40.0 43200 < th dose independent rect. 16 15
8 803.04 radiation 20.0 43200 > th dose dependent rect. 17 14
9 803.34 radiation 20.0 43200 > th dose dependent rect. 6 1
23 805.84 radiation 40.0 43200 < th dose independent rect. 16 10
27 810.22 radiation 30.0 43200 < th dose independent rect. 3 4
29 810.40 radiation 30.0 43200 < th dose independent rect. 1 6
30 810.55 humidity 90.0 4320 > th dose independent rect. 23 2
34 811.37 wind 7.0 14400 > th dose dependent rect. 6 4
43 813.25 humidity 60.0 43200 < th dose independent rect. 6 6
46 813.52 humidity 60.0 43200 < th dose independent rect. 10 1
53 814.08 radiation 10.0 43200 < th dose independent rect. 5 1
55 814.19 radiation 10.0 43200 < th dose independent rect. 3 3
56 814.21 radiation 10.0 43200 < th dose independent rect. 1 5
61 814.50 radiation 10.0 43200 < th dose independent rect. 19 11
65 814.67 radiation 10.0 43200 < th dose independent rect. 21 9
70 814.88 radiation 40.0 43200 < th dose independent rect. 7 1
74 815.20 radiation 40.0 43200 < th dose independent rect. 21 11
90 816.95 radiation 20.0 43200 < th dose independent rect. 17 3
92 817.04 radiation 20.0 43200 < th dose independent rect. 17 5
104 817.84 radiation 30.0 43200 > th dose dependent rect. 16 1
124 818.21 humidity 60.0 43200 > th dose independent rect. 6 5
128 818.40 radiation 1.0 43200 > th dose independent rect. 4 1
138 818.40 radiation 1.0 43200 > th dose dependent rect. 4 1
153 818.69 wind 7.0 14400 < th dose independent rect. 5 5
155 818.81 humidity 70.0 43200 > th dose independent rect. 5 2
159 819.18 wind 7.0 14400 > th dose independent rect. 5 5
162 819.28 wind 7.0 14400 > th dose dependent rect. 21 1
188 819.94 humidity 70.0 43200 < th dose independent rect. 6 1
220 821.33 humidity 90.0 4320 < th dose independent rect. 23 1
221 821.40 humidity 70.0 43200 < th dose dependent rect. 6 2
226 821.63 wind 9.0 43200 > th dose dependent rect. 11 1
236 822.08 radiation 1.0 43200 < th dose independent rect. 10 2
237 822.08 radiation 1.0 43200 < th dose dependent rect. 10 2
239 822.13 radiation 1.0 43200 > th dose independent rect. 10 2
254 822.75 temperature 20.0 14400 < th dose dependent rect. 23 1
257 822.95 radiation 1.0 43200 < th dose dependent rect. 6 6
283 823.94 radiation 10.0 43200 > th dose independent rect. 17 13
307 824.39 radiation 1.0 43200 < th dose independent rect. 8 5
310 824.51 wind 9.0 43200 > th dose dependent rect. 11 3
314 824.64 radiation 1.0 43200 > th dose independent rect. 8 5
315 824.64 humidity 60.0 43200 > th dose independent rect. 18 17
316 824.69 radiation 10.0 43200 > th dose independent rect. 17 1
330 824.69 radiation 1.0 43200 < th dose dependent rect. 8 6
340 825.36 humidity 60.0 43200 < th dose dependent rect. 10 1
343 825.49 precipitation 0.1 43200 > th dose independent rect. 6 1
344 825.49 precipitation 0.1 43200 > th dose dependent rect. 6 1
352 825.80 temperature 20.0 43200 > th dose independent rect. 9 1
368 826.92 temperature 20.0 43200 < th dose independent rect. 14 4
377 827.11 temperature 20.0 43200 > th dose independent rect. 13 5
391 827.55 precipitation 0.1 43200 < th dose independent rect. 6 1
392 827.55 precipitation 0.1 43200 < th dose dependent rect. 6 1
393 827.62 temperature 20.0 14400 < th dose dependent rect. 3 21
400 827.80 radiation 1.0 43200 < th dose dependent rect. 6 1
402 827.84 temperature 20.0 43200 < th dose independent rect. 9 1
425 828.20 temperature 20.0 43200 < th dose dependent rect. 2 1
444 828.47 temperature 20.0 43200 < th dose independent rect. 9 10
451 828.54 temperature 20.0 43200 > th dose independent rect. 9 9
457 828.61 temperature 20.0 14400 < th dose dependent rect. 7 22
461 828.69 temperature 20.0 43200 < th dose dependent rect. 21 15
464 828.72 wind 1.0 43200 < th dose dependent rect. 5 1
467 828.74 temperature 20.0 43200 < th dose dependent rect. 21 12
490 828.89 temperature 20.0 43200 < th dose independent rect. 7 11
492 828.90 wind 7.0 14400 < th dose independent rect. 21 13
494 828.91 temperature 20.0 43200 < th dose dependent sin 12 NA
495 828.91 wind 1.0 43200 < th dose dependent rect. 16 2
661 829.73 precipitation 0.1 43200 > th dose independent rect. 14 1
663 829.73 precipitation 0.1 43200 > th dose dependent rect. 14 1
670 829.75 wind 7.0 14400 > th dose independent rect. 21 1
736 829.92 wind 7.0 14400 > th dose independent rect. 21 14
740 829.93 temperature 20.0 14400 < th dose dependent no NA NA
753 829.97 temperature 20.0 14400 < th dose dependent sin 0 NA
952 830.69 wind 1.0 43200 > th dose independent rect. 5 1
974 830.78 temperature 20.0 43200 < th dose dependent rect. 6 2