BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0472900 Os09g0472900|AK063132
         (134 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30380.1  | chr4:14860486-14860994 FORWARD LENGTH=124          127   2e-30
AT2G18660.1  | chr2:8091032-8091644 REVERSE LENGTH=131             98   1e-21
AT2G45110.1  | chr2:18599575-18601237 FORWARD LENGTH=260           45   1e-05

>AT4G30380.1 | chr4:14860486-14860994 FORWARD LENGTH=124
          Length = 123

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 74/102 (72%), Gaps = 4/102 (3%)

Query: 30  GTATFYTPPYTPSACYGFEDQGTMIAAASDVFWNGGAACGQQYVVTCTGPTNQGVPQPCT 89
           G ATFYT  YTP  CY    +G MIAAASD  W+ G  CG+ + V C+GP N  VP PCT
Sbjct: 24  GIATFYTS-YTP--CYRGTQEGVMIAAASDTLWDNGRVCGKMFTVKCSGPRN-AVPHPCT 79

Query: 90  GQSVTVKIVDHCPSGCAGTIDLSQEAFAIIANPDAGKVFIDY 131
           G+SV VKIVDHCPSGCA T+DLS+EAFA IANP AG + IDY
Sbjct: 80  GKSVKVKIVDHCPSGCASTLDLSREAFAQIANPVAGIINIDY 121



>AT2G18660.1 | chr2:8091032-8091644 REVERSE LENGTH=131
          Length = 130

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 30  GTATFYTPPYTPSACYGFEDQGTMIAAASDVFWNGGAACGQQYVVTCTGPTNQGVPQPCT 89
           G A +Y PPYT SACYG + + T++    +  W  G ACG++Y V C G T     + CT
Sbjct: 28  GKAVYYDPPYTRSACYGTQRE-TLVVGVKNNLWQNGRACGRRYRVRCIGAT-YNFDRACT 85

Query: 90  GQSVTVKIVDHCPSGCAGTIDLSQEAFAIIANPDAGKVFIDY 131
           G++V VK+VD C   C G ++LS++AF +IAN DAG + + Y
Sbjct: 86  GRTVDVKVVDFCREPCNGDLNLSRDAFRVIANTDAGNIRVVY 127



>AT2G45110.1 | chr2:18599575-18601237 FORWARD LENGTH=260
          Length = 259

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 17/92 (18%)

Query: 53  MIAAASDVFWNGGAACGQQYVVTCTGPTNQGVPQPCTGQSVTVKIVDHCPSG-CAGT--- 108
           M++A     +N G  CG  Y V C G         C+G  +TV I D CP G CA     
Sbjct: 68  MVSAGGPSLFNNGKGCGTCYQVVCIGHP------ACSGSPITVTITDECPGGPCASEPVH 121

Query: 109 IDLSQEAFAIIANP-------DAGKVFIDYQQ 133
           IDLS +A   +A P        AG + ++Y++
Sbjct: 122 IDLSGKAMGALAKPGQADQLRSAGVIRVNYKR 153



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,532,922
Number of extensions: 91078
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 3
Length of query: 134
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 46
Effective length of database: 8,693,961
Effective search space: 399922206
Effective search space used: 399922206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)