Os09g0440200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BRCT domain containing protein.
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Os09g0440200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BRCT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.74 | 0.328 | 9.29 | -1.37 | 0.53 | 1.13 | -0.112 | -1.83 | -0.127 | 5.25 | 26.9 | 1265 | -- | -- |
| 49.47 | 0.328 | 9.23 | -0.921 | 0.537 | 0.923 | -0.161 | -- | 0.0238 | 5.22 | 28.05 | 1246 | -- | -- |
| 48.75 | 0.325 | 9.29 | -1.37 | 0.531 | 1.13 | -- | -1.88 | -0.119 | 5.27 | 27.01 | 1254 | -- | -- |
| 49.42 | 0.327 | 9.23 | -0.92 | 0.528 | 0.906 | -- | -- | 0.0116 | 5.3 | 27.78 | 1244 | -- | -- |
| 63.14 | 0.37 | 9.31 | -1.37 | -- | 1.19 | -- | -1.71 | -0.152 | -- | 26.39 | 1267 | -- | -- |
| 85.99 | 0.435 | 9.24 | -0.651 | 0.621 | -- | 0.124 | -- | -0.0374 | 4.42 | -- | -- | -- | -- |
| 86.03 | 0.434 | 9.24 | -0.652 | 0.622 | -- | -- | -- | -0.0381 | 4.43 | -- | -- | -- | -- |
| 63.59 | 0.371 | 9.25 | -0.949 | -- | 1 | -- | -- | -0.0557 | -- | 26.5 | 1266 | -- | -- |
| 70.13 | 0.39 | 9.2 | -- | 0.524 | 0.752 | -- | -- | 0.155 | 5.09 | 28.78 | 1231 | -- | -- |
| 106.73 | 0.483 | 9.25 | -0.627 | -- | -- | -- | -- | -0.0216 | -- | -- | -- | -- | -- |
| 97.23 | 0.461 | 9.23 | -- | 0.609 | -- | -- | -- | 0.0345 | 4.46 | -- | -- | -- | -- |
| 84.83 | 0.429 | 9.21 | -- | -- | 0.8 | -- | -- | 0.158 | -- | 28.63 | 1245 | -- | -- |
| 117.12 | 0.505 | 9.23 | -- | -- | -- | -- | -- | 0.048 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 3 | 49.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 5 | 49.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 30 | 50.13 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 52 | 50.33 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 82 | 50.58 | temperature | 30 | 1440 | > th | dose dependent | sin | 11 | NA |
| 212 | 51.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 280 | 51.46 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 289 | 51.54 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 340 | 51.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 341 | 51.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 344 | 51.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 372 | 51.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 373 | 51.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 407 | 51.82 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 563 | 51.99 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 564 | 52.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 604 | 52.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 624 | 52.08 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 632 | 52.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 13 |
| 637 | 52.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 641 | 52.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 668 | 52.22 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 721 | 52.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 17 |
| 928 | 52.87 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 929 | 52.88 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 957 | 52.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 995 | 53.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 1000 | 53.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |