BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0440200 Os09g0440200|AK073097
(548 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G43930.1 | chr3:15760948-15763263 REVERSE LENGTH=503 421 e-118
AT2G26270.1 | chr2:11184739-11187659 FORWARD LENGTH=471 416 e-116
AT1G77320.1 | chr1:29056740-29062710 FORWARD LENGTH=973 58 2e-08
>AT3G43930.1 | chr3:15760948-15763263 REVERSE LENGTH=503
Length = 502
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/514 (45%), Positives = 318/514 (61%), Gaps = 81/514 (15%)
Query: 51 DGPFAGLVICVTGLSKEARTQVKEATERMGGEYSGSLHPKCTHLVVQSFAGRKFEHAVKH 110
DGPF+GL+ICVTGLSKEAR QVKEATER+GGEYS LH CTHLVVQ++ GRKFEHA+KH
Sbjct: 54 DGPFSGLIICVTGLSKEARKQVKEATERLGGEYSALLHSLCTHLVVQNYDGRKFEHALKH 113
Query: 111 GAKNGLFVVTLGWLVDCVRRSMRLDESLYSIKN-----IGENGMP-------LGEFNRLV 158
G + L++VTLGW VD V R+++L ES Y++KN + E+G+ L +
Sbjct: 114 GRRETLYIVTLGWFVDSVCRNVKLSESFYAVKNPEETKVNEDGLKSVYAVEKLHRGGGVQ 173
Query: 159 GAPVSGNSCLPPMMFQEKTFSDTTEKHRLQTSRKEHDHDEFLFTNDSIYIDPGISGEMRK 218
G V+G+ + + S++ID IS E+R+
Sbjct: 174 GIEVTGS-------------------------------KDLALSGYSVFIDADISEEVRR 202
Query: 219 KVSDAATREGAKLLDHWFIGCHATYVVCEDASVKRYVGHSDNIVTPLWILKTAKEKGLQR 278
+VS A GAKL+ WFIGC+A++VVCE SV RY+GHS N+VTPLW+ KT +EK Q
Sbjct: 203 QVSQVAVEGGAKLMTQWFIGCNASHVVCEGGSVLRYLGHSSNLVTPLWLQKTLEEKPTQN 262
Query: 279 LVHLSSDLARQVATILENAQTFQENRKIGDXXXXXXXXXXXXXTQGEIDEIHQERQKFVE 338
LV +S DLAR + T++EN +G + + H+ERQK VE
Sbjct: 263 LVQMSDDLARDLRTMIEN---------LGKE------------SPTDRTRPHKERQKIVE 301
Query: 339 VAKKNVRDRRARRMQSCEVPIHPITPVKLMESICWTVSEPTTSACIYTE-FSWSDDAFEQ 397
AKK V +R A+ ++ I P+ L++SI WT+SEPT++A + + FS +DD +
Sbjct: 302 SAKKTVTNRHAKMGKTL---IQPLNLSSLLDSISWTISEPTSTASVIIDSFSNNDDIERK 358
Query: 398 QSTTFFDANGDGKDDQSSDSFTRPLR---ESEKSEVIFKNHFLTVLFPIDRFGELGPSSR 454
+ FFDA +S+DSFT +R ESE+ E+++KNHF+T+L PID +GE+GPSSR
Sbjct: 359 SLSAFFDA-------KSNDSFTHSMRLLTESERMELVYKNHFITLLLPIDWYGEMGPSSR 411
Query: 455 TFFSNGGFTRIQVLDHIYNFYQENMSSDEINVALQTDSRHADRLRSLYASTESAERGFVT 514
++FS GFT Q+L +IY FYQENMS +E+ A+ T+SRH+++LR A+ + G
Sbjct: 412 SYFSETGFTCQQILQNIYAFYQENMSEEELKAAIHTNSRHSEKLR---AADSVMKGGKTV 468
Query: 515 FKRIDFLGSRRSFEGLKRLSRENNSNVYELVIRA 548
FKRI FLGS + FE LKR+S N SNVYEL+I+A
Sbjct: 469 FKRIQFLGSEKGFEMLKRVSSFNCSNVYELIIKA 502
>AT2G26270.1 | chr2:11184739-11187659 FORWARD LENGTH=471
Length = 470
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/451 (48%), Positives = 298/451 (66%), Gaps = 15/451 (3%)
Query: 100 AGRKFEHAVKHGAKNGLFVVTLGWLVDCVRRSMRLDESLYSIKNIGENGMPLGEFNRLVG 159
GRKFEH +KHGA+NGLFVVT+GW VD V+R+ R+ ESLY++K + +N E +R+
Sbjct: 33 CGRKFEHTLKHGARNGLFVVTIGWFVDSVKRNFRMSESLYNVKQLRQNCEKGDELSRVFD 92
Query: 160 APVSGNSCLPPMMFQEKTFSDTTEKHRLQTSRKEHDHD-EFLFTNDSIYIDPGISGEMRK 218
+ P Q F +T+ H++ +S E + + +Y+D IS E+R
Sbjct: 93 L----ETICRPRQIQAVHFGTSTKNHQVSSSGTESGTSVDMSLADHCMYVDSDISDELRL 148
Query: 219 KVSDAATREGAKLLDHWFIGCHATYVVCEDASVKRYVGHSDNIVTPLWILKTAKEKGLQR 278
KV A +GAK++D WFIGC+A++VVCE AS++RY+GH+ IV+PLW+LKT EK QR
Sbjct: 149 KVLKVAGEQGAKVIDSWFIGCNASFVVCEGASIQRYLGHAKTIVSPLWVLKTV-EKHRQR 207
Query: 279 LVHLSSDLARQVATILENAQTFQENRKIGDXXXXXXXXXXXXXTQGEIDEIHQERQKFVE 338
LVH+S DLARQ+ +LEN + N KI ++ QER++ V
Sbjct: 208 LVHMSPDLARQLGLMLENFEDGAANEKISGQGNSQEAFKSRSLSK-------QERKETVN 260
Query: 339 VAKKNVRDRRARRMQSCEVPIHPITPVKLMESICWTVSEPTTSACIYTEFSWSDDAFEQQ 398
+AK VR RRAR MQ+C+ PI IT L+++ICWT+SE ++A I+T+ S S D E Q
Sbjct: 261 IAKTGVRRRRARHMQTCQNPIRRITQYSLLDNICWTISEAASAATIFTD-SSSRDISEPQ 319
Query: 399 STTFFDANGDGKDDQSSDS-FTRPLRESEKSEVIFKNHFLTVLFPIDRFGELGPSSRTFF 457
+ D G D +S S TR L ESEK+EVIFK+ FLT+L+P DRF E+GPSSRT+F
Sbjct: 320 PSVVQDGIDKGLDPVASFSNSTRALTESEKTEVIFKDSFLTILYPADRFSEMGPSSRTYF 379
Query: 458 SNGGFTRIQVLDHIYNFYQENMSSDEINVALQTDSRHADRLRSLYASTESAERGFVTFKR 517
S+ GFT +Q+LD+IY FYQEN+ EI VA+ TDSRHADRLR++Y S E+++ G + F R
Sbjct: 380 SDSGFTCLQILDYIYRFYQENLPDHEIEVAIHTDSRHADRLRTVYCSKETSDEGCLVFPR 439
Query: 518 IDFLGSRRSFEGLKRLSRENNSNVYELVIRA 548
I+ LGSR+SFE LKR++ ENNSNVYEL+IRA
Sbjct: 440 IELLGSRKSFEMLKRVNGENNSNVYELMIRA 470
>AT1G77320.1 | chr1:29056740-29062710 FORWARD LENGTH=973
Length = 972
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 46 RRPLPDGPFAGLVICVTGLSKEARTQVKEATERMGGEYSGSLHPKCTHLVVQSFAGRKFE 105
+ P PF+GL ICVT + + R +++ GG YS L CTHL+ + G K++
Sbjct: 177 QEPYKIPPFSGLTICVTRIPADERKGMEKVISEYGGSYSAELTKSCTHLIADAAEGDKYK 236
Query: 106 HAVKHGAKNGLFVVTLGWLVDCVRRSMRLDESLYSI 141
A K G + +VT W + + + L+E Y +
Sbjct: 237 VARKWGH---IQIVTRKWFQQSIDKKVCLNEESYPV 269
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,943,987
Number of extensions: 462704
Number of successful extensions: 1166
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1162
Number of HSP's successfully gapped: 4
Length of query: 548
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 445
Effective length of database: 8,282,721
Effective search space: 3685810845
Effective search space used: 3685810845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)