BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0440200 Os09g0440200|AK073097
(548 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0440200 BRCT domain containing protein 1031 0.0
>Os09g0440200 BRCT domain containing protein
Length = 548
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/532 (93%), Positives = 499/532 (93%)
Query: 17 LVLPGMQPXXXXXXXXXXXXXXXXXXXXDRRPLPDGPFAGLVICVTGLSKEARTQVKEAT 76
LVLPGMQP DRRPLPDGPFAGLVICVTGLSKEARTQVKEAT
Sbjct: 17 LVLPGMQPSSASAASSSSFSRGGHGGGGDRRPLPDGPFAGLVICVTGLSKEARTQVKEAT 76
Query: 77 ERMGGEYSGSLHPKCTHLVVQSFAGRKFEHAVKHGAKNGLFVVTLGWLVDCVRRSMRLDE 136
ERMGGEYSGSLHPKCTHLVVQSFAGRKFEHAVKHGAKNGLFVVTLGWLVDCVRRSMRLDE
Sbjct: 77 ERMGGEYSGSLHPKCTHLVVQSFAGRKFEHAVKHGAKNGLFVVTLGWLVDCVRRSMRLDE 136
Query: 137 SLYSIKNIGENGMPLGEFNRLVGAPVSGNSCLPPMMFQEKTFSDTTEKHRLQTSRKEHDH 196
SLYSIKNIGENGMPLGEFNRLVGAPVSGNSCLPPMMFQEKTFSDTTEKHRLQTSRKEHDH
Sbjct: 137 SLYSIKNIGENGMPLGEFNRLVGAPVSGNSCLPPMMFQEKTFSDTTEKHRLQTSRKEHDH 196
Query: 197 DEFLFTNDSIYIDPGISGEMRKKVSDAATREGAKLLDHWFIGCHATYVVCEDASVKRYVG 256
DEFLFTNDSIYIDPGISGEMRKKVSDAATREGAKLLDHWFIGCHATYVVCEDASVKRYVG
Sbjct: 197 DEFLFTNDSIYIDPGISGEMRKKVSDAATREGAKLLDHWFIGCHATYVVCEDASVKRYVG 256
Query: 257 HSDNIVTPLWILKTAKEKGLQRLVHLSSDLARQVATILENAQTFQENRKIGDXXXXXXXX 316
HSDNIVTPLWILKTAKEKGLQRLVHLSSDLARQVATILENAQTFQENRKIGD
Sbjct: 257 HSDNIVTPLWILKTAKEKGLQRLVHLSSDLARQVATILENAQTFQENRKIGDVPSVNSNS 316
Query: 317 XXXXXTQGEIDEIHQERQKFVEVAKKNVRDRRARRMQSCEVPIHPITPVKLMESICWTVS 376
TQGEIDEIHQERQKFVEVAKKNVRDRRARRMQSCEVPIHPITPVKLMESICWTVS
Sbjct: 317 SGVPSTQGEIDEIHQERQKFVEVAKKNVRDRRARRMQSCEVPIHPITPVKLMESICWTVS 376
Query: 377 EPTTSACIYTEFSWSDDAFEQQSTTFFDANGDGKDDQSSDSFTRPLRESEKSEVIFKNHF 436
EPTTSACIYTEFSWSDDAFEQQSTTFFDANGDGKDDQSSDSFTRPLRESEKSEVIFKNHF
Sbjct: 377 EPTTSACIYTEFSWSDDAFEQQSTTFFDANGDGKDDQSSDSFTRPLRESEKSEVIFKNHF 436
Query: 437 LTVLFPIDRFGELGPSSRTFFSNGGFTRIQVLDHIYNFYQENMSSDEINVALQTDSRHAD 496
LTVLFPIDRFGELGPSSRTFFSNGGFTRIQVLDHIYNFYQENMSSDEINVALQTDSRHAD
Sbjct: 437 LTVLFPIDRFGELGPSSRTFFSNGGFTRIQVLDHIYNFYQENMSSDEINVALQTDSRHAD 496
Query: 497 RLRSLYASTESAERGFVTFKRIDFLGSRRSFEGLKRLSRENNSNVYELVIRA 548
RLRSLYASTESAERGFVTFKRIDFLGSRRSFEGLKRLSRENNSNVYELVIRA
Sbjct: 497 RLRSLYASTESAERGFVTFKRIDFLGSRRSFEGLKRLSRENNSNVYELVIRA 548
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,644,115
Number of extensions: 678716
Number of successful extensions: 1683
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1682
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 442
Effective length of database: 11,501,117
Effective search space: 5083493714
Effective search space used: 5083493714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)