Os09g0421200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA-binding arm domain containing protein.
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Os09g0421200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA-binding arm domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.09 | 0.413 | 3 | -0.0865 | 0.142 | 0.531 | -0.0509 | 1.36 | 0.126 | 6.41 | 61.7 | 15 | -- | -- |
| 78.44 | 0.412 | 2.99 | -0.0575 | 0.14 | 0.679 | -0.0392 | -- | 0.145 | 6.31 | 60 | 15 | -- | -- |
| 77.08 | 0.409 | 3 | -0.0793 | 0.143 | 0.614 | -- | 1.62 | 0.131 | 6.44 | 62.61 | 14 | -- | -- |
| 78.42 | 0.412 | 3 | -0.0646 | 0.141 | 0.719 | -- | -- | 0.132 | 6.27 | 60 | 15 | -- | -- |
| 78.12 | 0.412 | 3 | -0.0828 | -- | 0.641 | -- | 1.65 | 0.129 | -- | 62.75 | 14 | -- | -- |
| 80.86 | 0.422 | 3 | -0.0556 | 0.146 | -- | 0.0173 | -- | 0.122 | 7.21 | -- | -- | -- | -- |
| 80.86 | 0.421 | 3 | -0.0553 | 0.146 | -- | -- | -- | 0.122 | 7.18 | -- | -- | -- | -- |
| 79.46 | 0.415 | 3 | -0.0613 | -- | 0.718 | -- | -- | 0.136 | -- | 60 | 15 | -- | -- |
| 78.54 | 0.413 | 2.99 | -- | 0.141 | 0.712 | -- | -- | 0.14 | 6.31 | 60 | 15 | -- | -- |
| 81.98 | 0.423 | 3 | -0.0526 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 80.94 | 0.421 | 3 | -- | 0.145 | -- | -- | -- | 0.128 | 7.2 | -- | -- | -- | -- |
| 79.56 | 0.415 | 3 | -- | -- | 0.714 | -- | -- | 0.142 | -- | 60 | 15 | -- | -- |
| 82.05 | 0.423 | 3 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.77 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 2 | 76.44 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 3 | 76.48 | humidity | 70.0 | 30 | < th | dose dependent | rect. | 8 | 3 |
| 7 | 76.68 | humidity | 90.0 | 90 | < th | dose independent | rect. | 24 | 3 |
| 9 | 76.80 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 24 | 3 |
| 11 | 76.82 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 12 | 76.95 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 26 | 76.98 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 30 | 77.05 | humidity | 80.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 31 | 77.06 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 33 | 77.06 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 35 | 77.06 | wind | 1.0 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 39 | 77.08 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 9 | 1 |
| 41 | 77.08 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 43 | 77.10 | wind | 1.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 49 | 77.13 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 1 | 2 |
| 54 | 77.14 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 56 | 77.15 | humidity | 90.0 | 270 | > th | dose independent | rect. | 10 | 3 |
| 58 | 77.15 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 3 |
| 60 | 77.16 | humidity | 70.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 68 | 77.17 | wind | 1.0 | 30 | < th | dose independent | rect. | 9 | 2 |
| 71 | 77.17 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 89 | 77.19 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 99 | 77.21 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 24 | 3 |
| 105 | 77.24 | wind | 1.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 136 | 77.28 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 2 |
| 142 | 77.33 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 181 | 77.33 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 223 | 77.35 | radiation | 30.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 230 | 77.40 | humidity | 60.0 | 90 | < th | dose independent | rect. | 18 | 15 |
| 340 | 77.43 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 521 | 77.53 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 522 | 77.53 | wind | 1.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 527 | 77.54 | wind | 3.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 583 | 77.57 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 612 | 77.60 | wind | 1.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 670 | 77.63 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 734 | 77.70 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 739 | 77.71 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 757 | 77.73 | temperature | 20.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 765 | 77.75 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 5 | 1 |
| 789 | 77.75 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 797 | 77.77 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 805 | 77.80 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 806 | 77.81 | wind | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 809 | 77.81 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 811 | 77.81 | humidity | 50.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 812 | 77.81 | humidity | 90.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 816 | 77.81 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 1 |
| 818 | 77.81 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 819 | 77.81 | wind | 9.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 820 | 77.81 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 822 | 77.81 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 864 | 77.84 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 905 | 77.85 | radiation | 40.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 942 | 77.89 | humidity | 90.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 949 | 77.91 | wind | 3.0 | 10 | > th | dose independent | rect. | 1 | 1 |
| 956 | 77.92 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 958 | 77.92 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 986 | 77.96 | humidity | 90.0 | 10 | < th | dose independent | rect. | 24 | 4 |