BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0421200 Os09g0421200|AK059290
         (336 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0421200  tRNA-binding arm domain containing protein          526   e-150

>Os09g0421200 tRNA-binding arm domain containing protein
          Length = 336

 Score =  526 bits (1355), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/336 (83%), Positives = 282/336 (83%)

Query: 1   MEKKILDEQSLDQKDELQRLKSSLESCEKAMEDCNIQNELEKDSILSELLTLQKEVVYXX 60
           MEKKILDEQSLDQKDELQRLKSSLESCEKAMEDCNIQNELEKDSILSELLTLQKEVVY  
Sbjct: 1   MEKKILDEQSLDQKDELQRLKSSLESCEKAMEDCNIQNELEKDSILSELLTLQKEVVYLS 60

Query: 61  XXXXXXXXXXIRKELDRXXXXXXXXXXXXXXSIQEKIKLESEKAEAQREIKKLQSQRTLL 120
                     IRKELDR              SIQEKIKLESEKAEAQREIKKLQSQRTLL
Sbjct: 61  SSSLMKEKESIRKELDRTKTKLKETENKLKNSIQEKIKLESEKAEAQREIKKLQSQRTLL 120

Query: 121 ERDLRKRDSFTVDKRHEQSVKSKELAGIYDQAVQIQEDYGKLEMHAFDMEAEIASLQEAL 180
           ERDLRKRDSFTVDKRHEQSVKSKELAGIYDQAVQIQEDYGKLEMHAFDMEAEIASLQEAL
Sbjct: 121 ERDLRKRDSFTVDKRHEQSVKSKELAGIYDQAVQIQEDYGKLEMHAFDMEAEIASLQEAL 180

Query: 181 VTTIAEKEEALSRVELLTSAVEDLESRLNXXXXXXXXXXXXXXVLTRKLDASESISKKLE 240
           VTTIAEKEEALSRVELLTSAVEDLESRLN              VLTRKLDASESISKKLE
Sbjct: 181 VTTIAEKEEALSRVELLTSAVEDLESRLNSAESETSSLLEETAVLTRKLDASESISKKLE 240

Query: 241 ASISSLSREKEDMGIELTDVLLEMESERSTWTAKEKAYLEAXXXXXXXXXXXXXXSEDLI 300
           ASISSLSREKEDMGIELTDVLLEMESERSTWTAKEKAYLEA              SEDLI
Sbjct: 241 ASISSLSREKEDMGIELTDVLLEMESERSTWTAKEKAYLEAKQKLNICNKNNCKLSEDLI 300

Query: 301 KVRQELACCREQYSILEAKMIFSKNDTNEEKYWLVL 336
           KVRQELACCREQYSILEAKMIFSKNDTNEEKYWLVL
Sbjct: 301 KVRQELACCREQYSILEAKMIFSKNDTNEEKYWLVL 336



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.125    0.315 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,869,542
Number of extensions: 203107
Number of successful extensions: 1017
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 156 (64.7 bits)