Os09g0386400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Proteasome component region PCI domain containing protein.
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Os09g0386400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Proteasome component region PCI domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.17 | 0.206 | 8.62 | 0.235 | 0.565 | -0.433 | -0.166 | -0.137 | -0.144 | 4.41 | 1010 | 22434 | -- | -- |
| 19.21 | 0.204 | 8.62 | 0.264 | 0.568 | -0.423 | -0.178 | -- | -0.141 | 4.4 | 1010 | 22436 | -- | -- |
| 19.24 | 0.204 | 8.62 | 0.233 | 0.564 | -0.433 | -- | -0.146 | -0.144 | 4.39 | 1010 | 22425 | -- | -- |
| 19.22 | 0.204 | 8.62 | 0.287 | 0.565 | -0.457 | -- | -- | -0.137 | 4.39 | 1010 | 22331 | -- | -- |
| 36.24 | 0.28 | 8.62 | 0.265 | -- | -0.414 | -- | -0.053 | -0.131 | -- | 1010 | 22068 | -- | -- |
| 24.15 | 0.23 | 8.63 | 0.107 | 0.553 | -- | -0.178 | -- | -0.195 | 4.45 | -- | -- | -- | -- |
| 24.24 | 0.231 | 8.63 | 0.108 | 0.552 | -- | -- | -- | -0.194 | 4.43 | -- | -- | -- | -- |
| 36.24 | 0.28 | 8.62 | 0.278 | -- | -0.406 | -- | -- | -0.127 | -- | 1010 | 22085 | -- | -- |
| 21.02 | 0.214 | 8.63 | -- | 0.563 | -0.388 | -- | -- | -0.178 | 4.37 | 1009 | 21584 | -- | -- |
| 40.57 | 0.298 | 8.63 | 0.13 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 24.55 | 0.232 | 8.63 | -- | 0.554 | -- | -- | -- | -0.206 | 4.43 | -- | -- | -- | -- |
| 37 | 0.283 | 8.65 | -- | -- | -0.471 | -- | -- | -0.269 | -- | 1006 | 20874 | -- | -- |
| 41.02 | 0.299 | 8.64 | -- | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 2 | 19.07 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 4 | 19.19 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 6 | 19.27 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 12 | 19.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 20 | 19.30 | humidity | 60 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 23 | 19.31 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 32 | 19.31 | humidity | 50 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 33 | 19.31 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 36 | 19.32 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 40 | 19.32 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 55 | 19.33 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 86 | 19.36 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 19 |
| 135 | 19.40 | humidity | 50 | 43200 | < th | dose independent | sin | 3 | NA |
| 140 | 19.40 | humidity | 50 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 164 | 19.40 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 7 |
| 201 | 19.42 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 204 | 19.42 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 207 | 19.42 | humidity | 50 | 43200 | > th | dose independent | rect. | 12 | 20 |
| 238 | 19.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 270 | 19.43 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 273 | 19.44 | humidity | 50 | 43200 | > th | dose independent | sin | 5 | NA |
| 309 | 19.44 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 323 | 19.44 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 338 | 19.45 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 357 | 19.45 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 410 | 19.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 431 | 19.47 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 441 | 19.47 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 446 | 19.47 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 467 | 19.48 | humidity | 70 | 43200 | > th | dose independent | rect. | 12 | 11 |
| 493 | 19.48 | humidity | 50 | 43200 | < th | dose dependent | sin | 17 | NA |
| 516 | 19.49 | wind | 9 | 43200 | > th | dose independent | sin | 19 | NA |
| 522 | 19.49 | humidity | 70 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 533 | 19.49 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 553 | 19.49 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 594 | 19.50 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 603 | 19.50 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 617 | 19.50 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 619 | 19.50 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 20 |
| 620 | 19.50 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 687 | 19.51 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 697 | 19.51 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 704 | 19.51 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 729 | 19.51 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 769 | 19.52 | wind | 9 | 43200 | < th | dose independent | sin | 19 | NA |
| 771 | 19.52 | humidity | 70 | 43200 | > th | dose independent | sin | 19 | NA |
| 775 | 19.52 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 796 | 19.52 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 797 | 19.52 | radiation | 30 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 806 | 19.53 | wind | 9 | 43200 | > th | dose independent | sin | 16 | NA |
| 820 | 19.53 | humidity | 70 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 821 | 19.53 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 826 | 19.53 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 867 | 19.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 880 | 19.54 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 885 | 19.54 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 892 | 19.54 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 894 | 19.54 | humidity | 70 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 914 | 19.54 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 930 | 19.54 | humidity | 50 | 43200 | > th | dose dependent | sin | 18 | NA |
| 948 | 19.55 | humidity | 70 | 43200 | > th | dose independent | sin | 1 | NA |
| 958 | 19.55 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 10 |