BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0386400 Os09g0386400|AK063271
         (409 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0386400  Proteasome component region PCI domain contain...   768   0.0  

>Os09g0386400 Proteasome component region PCI domain containing protein
          Length = 409

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/409 (92%), Positives = 377/409 (92%)

Query: 1   MAAYLSMGEAHRRIADYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALSAFPDFPR 60
           MAAYLSMGEAHRRIADY                                DALSAFPDFPR
Sbjct: 1   MAAYLSMGEAHRRIADYLSRVADSVSSSDGAALASLLAVSSAQAPAPLSDALSAFPDFPR 60

Query: 61  LAADRYPHLSDLLPPLLRAIHSHSLRRFADAYSSFEKAANAFLQEFRNWETPWAMEAMHT 120
           LAADRYPHLSDLLPPLLRAIHSHSLRRFADAYSSFEKAANAFLQEFRNWETPWAMEAMHT
Sbjct: 61  LAADRYPHLSDLLPPLLRAIHSHSLRRFADAYSSFEKAANAFLQEFRNWETPWAMEAMHT 120

Query: 121 VALEIRLLAEKADRELATSGKNPDKLQSAGSFLMKVFGALAVKGPKRIGALYVTCQLFKI 180
           VALEIRLLAEKADRELATSGKNPDKLQSAGSFLMKVFGALAVKGPKRIGALYVTCQLFKI
Sbjct: 121 VALEIRLLAEKADRELATSGKNPDKLQSAGSFLMKVFGALAVKGPKRIGALYVTCQLFKI 180

Query: 181 YFRLGTVHLCRSVIRSIETARNFDFEDFPVKDKVTYMYYTGRLEVFNENFLVADQKLTYA 240
           YFRLGTVHLCRSVIRSIETARNFDFEDFPVKDKVTYMYYTGRLEVFNENFLVADQKLTYA
Sbjct: 181 YFRLGTVHLCRSVIRSIETARNFDFEDFPVKDKVTYMYYTGRLEVFNENFLVADQKLTYA 240

Query: 241 LVHCNPQYESNLRRILKFLIPVKLSIGVLPRITLLERYNLLEYADVVTSLKRGDLRLLRQ 300
           LVHCNPQYESNLRRILKFLIPVKLSIGVLPRITLLERYNLLEYADVVTSLKRGDLRLLRQ
Sbjct: 241 LVHCNPQYESNLRRILKFLIPVKLSIGVLPRITLLERYNLLEYADVVTSLKRGDLRLLRQ 300

Query: 301 ALERHEDQFLKSGVYLVLEKLELQVYQRLVKKIHIIQRQKEPAKAHQIKLEVVVKALKWL 360
           ALERHEDQFLKSGVYLVLEKLELQVYQRLVKKIHIIQRQKEPAKAHQIKLEVVVKALKWL
Sbjct: 301 ALERHEDQFLKSGVYLVLEKLELQVYQRLVKKIHIIQRQKEPAKAHQIKLEVVVKALKWL 360

Query: 361 EIDMDVDEVECIMACLIYKNLIKGYFAHKSKVLVLSKQDPFPKLNGKPV 409
           EIDMDVDEVECIMACLIYKNLIKGYFAHKSKVLVLSKQDPFPKLNGKPV
Sbjct: 361 EIDMDVDEVECIMACLIYKNLIKGYFAHKSKVLVLSKQDPFPKLNGKPV 409



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,483,217
Number of extensions: 420059
Number of successful extensions: 1118
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 306
Effective length of database: 11,657,759
Effective search space: 3567274254
Effective search space used: 3567274254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)