Os09g0375400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Appr>p cyclic nucleotide phosphodiesterase domain containing protein.
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Os09g0375400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Appr>p cyclic nucleotide phosphodiesterase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.55 | 0.202 | 10.1 | 1.02 | 0.529 | -0.591 | 0.153 | 1.49 | 0.179 | 0.91 | 20 | 1520 | -- | -- |
| 19.91 | 0.208 | 10.2 | 0.749 | 0.531 | -0.686 | 0.225 | -- | 0.168 | 1.06 | 15.33 | 8722 | -- | -- |
| 18.65 | 0.201 | 10.1 | 1.02 | 0.529 | -0.59 | -- | 1.51 | 0.179 | 0.907 | 20.01 | 1503 | -- | -- |
| 20 | 0.208 | 10.2 | 0.761 | 0.536 | -0.696 | -- | -- | 0.143 | 0.929 | 14.66 | 8765 | -- | -- |
| 24.72 | 0.233 | 10.2 | 0.69 | -- | -0.97 | -- | 0.695 | 0.125 | -- | 19.73 | 1662 | -- | -- |
| 28.81 | 0.252 | 10.2 | 0.376 | 0.512 | -- | 0.159 | -- | -0.0687 | 0.911 | -- | -- | -- | -- |
| 28.92 | 0.252 | 10.2 | 0.371 | 0.512 | -- | -- | -- | -0.0695 | 0.886 | -- | -- | -- | -- |
| 24.76 | 0.233 | 10.2 | 0.606 | -- | -1.19 | -- | -- | 0.0988 | -- | 14.36 | 1668 | -- | -- |
| 27.85 | 0.247 | 10.2 | -- | 0.343 | -0.536 | -- | -- | -0.0322 | 0.0892 | 20.17 | 1496 | -- | -- |
| 45.25 | 0.314 | 10.2 | 0.39 | -- | -- | -- | -- | -0.0599 | -- | -- | -- | -- | -- |
| 32.54 | 0.267 | 10.2 | -- | 0.518 | -- | -- | -- | -0.111 | 0.918 | -- | -- | -- | -- |
| 33.5 | 0.27 | 10.2 | -- | -- | -0.804 | -- | -- | 0.00902 | -- | 20.17 | 1496 | -- | -- |
| 49.26 | 0.328 | 10.2 | -- | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 17 | 17.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 16 |
| 20 | 18.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 43 | 18.14 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 111 | 18.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 118 | 18.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 127 | 18.42 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 141 | 18.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 142 | 18.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 173 | 18.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 207 | 18.58 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 215 | 18.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 232 | 18.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 280 | 18.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 287 | 18.63 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 354 | 18.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 435 | 18.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 447 | 18.71 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 475 | 18.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 614 | 18.79 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 669 | 18.82 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 780 | 18.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 852 | 18.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |