BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0375400 Os09g0375400|J100043H15
         (236 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40190.1  | chr5:16069298-16069849 REVERSE LENGTH=184          141   3e-34
AT3G28140.1  | chr3:10470552-10471106 FORWARD LENGTH=185          128   2e-30

>AT5G40190.1 | chr5:16069298-16069849 REVERSE LENGTH=184
          Length = 183

 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 108/184 (58%), Gaps = 8/184 (4%)

Query: 47  YAVELYFDPALENQVLKAWNALARRQLSSRLIDXXXXXXXXXXXXXXXXXXXXXXXXXXX 106
           YA+ELYFDPALENQVLKAWN  ARRQ+S++LI+                           
Sbjct: 5   YAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESVIKNF 64

Query: 107 XXXXXXXXXXXXXXXXXXXXXXXXXXGVLFLAPTPSAALLGIHAQLCELLRKDAGVEVPD 166
                                      VLFL+PTPS +LL +  QLC++L+K++ V++ +
Sbjct: 65  VSKQEPISISFSTIGSFSSDN-----NVLFLSPTPSLSLLQLQTQLCDMLKKES-VDIGE 118

Query: 167 VFRPDHWVPRCAVAVDVPRGRMAEAFCVLRELKLLPVSGYGMDIALVEVGPVVRELVSYP 226
            +R D WVP C VA+DVP+ RMAEAF VLR+LK LPV+GYGM+I LVE  P VRE+ S+P
Sbjct: 119 EYRVDSWVPFCPVALDVPKSRMAEAFSVLRDLK-LPVNGYGMEIGLVEFSP-VREVFSFP 176

Query: 227 LGGS 230
           LG +
Sbjct: 177 LGNT 180



>AT3G28140.1 | chr3:10470552-10471106 FORWARD LENGTH=185
          Length = 184

 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 102/184 (55%), Gaps = 7/184 (3%)

Query: 47  YAVELYFDPALENQVLKAWNALARRQLSSRLIDXXXXXXXXXXXXXXXXXXXXXXXXXXX 106
           YA+ELYFDPALENQVLKAWN  ARRQ+S+ LI+                           
Sbjct: 5   YAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEPIIKS 64

Query: 107 XXXXXXXXXXXXXXXXXXXXXXXXXXGVLFLAPTPSAALLGIHAQLCELLRKDAGVEVPD 166
                                       LFL+PTPS +L+ +  QLCE+++K+ G E+ +
Sbjct: 65  FSSKQEPISLSFSSIGSFSSDD----NALFLSPTPSLSLIQLQLQLCEVIKKE-GFEIGE 119

Query: 167 VFRPDHWVPRCAVAVDVPRGRMAEAFCVLRELKLLPVSGYGMDIALVEVGPVVRELVSYP 226
            +R D WVP C+VAVDVP+ R++E F VLR+LKLL V GY MDI LVE  P VRE+ S+ 
Sbjct: 120 EYRVDSWVPFCSVAVDVPKSRISEGFLVLRDLKLL-VYGYAMDIGLVEFSP-VREVFSFG 177

Query: 227 LGGS 230
           LG +
Sbjct: 178 LGNN 181



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,116,111
Number of extensions: 103492
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 4
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)