BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0375400 Os09g0375400|J100043H15
         (236 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0375400  Appr>p cyclic nucleotide phosphodiesterase dom...   263   7e-71

>Os09g0375400 Appr>p cyclic nucleotide phosphodiesterase domain containing
           protein
          Length = 236

 Score =  263 bits (673), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 141/194 (72%), Positives = 141/194 (72%)

Query: 43  QAGYYAVELYFDPALENQVLKAWNALARRQLSSRLIDXXXXXXXXXXXXXXXXXXXXXXX 102
           QAGYYAVELYFDPALENQVLKAWNALARRQLSSRLID                       
Sbjct: 43  QAGYYAVELYFDPALENQVLKAWNALARRQLSSRLIDAASRPHLPLLHLPAASLPDPLRL 102

Query: 103 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVLFLAPTPSAALLGIHAQLCELLRKDAGV 162
                                         GVLFLAPTPSAALLGIHAQLCELLRKDAGV
Sbjct: 103 APSLRALASRLDPLPLALSSLASPPSSPDAGVLFLAPTPSAALLGIHAQLCELLRKDAGV 162

Query: 163 EVPDVFRPDHWVPRCAVAVDVPRGRMAEAFCVLRELKLLPVSGYGMDIALVEVGPVVREL 222
           EVPDVFRPDHWVPRCAVAVDVPRGRMAEAFCVLRELKLLPVSGYGMDIALVEVGPVVREL
Sbjct: 163 EVPDVFRPDHWVPRCAVAVDVPRGRMAEAFCVLRELKLLPVSGYGMDIALVEVGPVVREL 222

Query: 223 VSYPLGGSGGAGAD 236
           VSYPLGGSGGAGAD
Sbjct: 223 VSYPLGGSGGAGAD 236



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,446,871
Number of extensions: 203326
Number of successful extensions: 460
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)