Os09g0375000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase).
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Os09g0375000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.45 | 0.494 | 6.6 | -1.12 | 0.404 | 1.11 | 0.125 | 0.651 | -0.453 | 5.8 | 3.302 | 1553 | -- | -- |
| 110.53 | 0.49 | 6.59 | -1.11 | 0.441 | 1.11 | 0.128 | -- | -0.463 | 5.78 | 2.789 | 1685 | -- | -- |
| 110.41 | 0.489 | 6.6 | -1.11 | 0.436 | 1.14 | -- | 0.797 | -0.453 | 5.83 | 3.3 | 1687 | -- | -- |
| 110.52 | 0.49 | 6.59 | -1.13 | 0.443 | 1.06 | -- | -- | -0.462 | 5.86 | 2.796 | 1687 | -- | -- |
| 118.11 | 0.506 | 6.61 | -1.06 | -- | 1.17 | -- | 1.01 | -0.433 | -- | 3.396 | 1353 | -- | -- |
| 120.25 | 0.514 | 6.59 | -1.37 | 0.383 | -- | 0.158 | -- | -0.467 | 5.32 | -- | -- | -- | -- |
| 120.31 | 0.514 | 6.59 | -1.37 | 0.384 | -- | -- | -- | -0.468 | 5.35 | -- | -- | -- | -- |
| 117.87 | 0.506 | 6.6 | -1.12 | -- | 1.01 | -- | -- | -0.452 | -- | 2.709 | 1352 | -- | -- |
| 139.85 | 0.551 | 6.57 | -- | 0.472 | 1.74 | -- | -- | -0.37 | 6.08 | 2.452 | 1684 | -- | -- |
| 127.99 | 0.529 | 6.6 | -1.36 | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
| 169.66 | 0.609 | 6.56 | -- | 0.361 | -- | -- | -- | -0.315 | 5.5 | -- | -- | -- | -- |
| 146.66 | 0.564 | 6.58 | -- | -- | 1.65 | -- | -- | -0.361 | -- | 2.355 | 1363 | -- | -- |
| 176.43 | 0.62 | 6.56 | -- | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.01 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 2 | 110.15 | wind | 5 | 720 | > th | dose independent | rect. | 20 | 19 |
| 4 | 110.27 | wind | 5 | 720 | < th | dose independent | rect. | 15 | 21 |
| 9 | 110.39 | wind | 3 | 1440 | > th | dose dependent | rect. | 7 | 20 |
| 17 | 110.49 | wind | 5 | 720 | < th | dose independent | rect. | 7 | 20 |
| 20 | 110.51 | wind | 3 | 1440 | > th | dose dependent | rect. | 10 | 17 |
| 27 | 110.55 | wind | 3 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 28 | 110.56 | wind | 3 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 29 | 110.56 | wind | 3 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 31 | 110.56 | wind | 3 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 35 | 110.58 | wind | 3 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 50 | 110.66 | wind | 5 | 720 | < th | dose independent | rect. | 21 | 22 |
| 61 | 110.69 | wind | 5 | 720 | < th | dose independent | rect. | 21 | 6 |
| 67 | 110.70 | wind | 3 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 68 | 110.71 | wind | 5 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 69 | 110.71 | wind | 3 | 1440 | > th | dose dependent | no | NA | NA |
| 74 | 110.74 | wind | 5 | 1440 | < th | dose independent | rect. | 10 | 18 |
| 81 | 110.75 | wind | 5 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 87 | 110.76 | wind | 5 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 104 | 110.78 | wind | 5 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 126 | 110.80 | wind | 3 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 135 | 110.82 | wind | 5 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 137 | 110.82 | wind | 9 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 150 | 110.84 | wind | 5 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 224 | 110.94 | wind | 5 | 1440 | > th | dose independent | no | NA | NA |
| 255 | 110.97 | wind | 5 | 1440 | < th | dose independent | no | NA | NA |
| 263 | 110.97 | wind | 5 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 278 | 110.99 | wind | 5 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 297 | 111.02 | wind | 5 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 306 | 111.03 | wind | 9 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 325 | 111.05 | wind | 5 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 354 | 111.09 | wind | 3 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 363 | 111.09 | wind | 5 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 407 | 111.14 | wind | 5 | 1440 | > th | dose independent | sin | 14 | NA |
| 408 | 111.14 | wind | 5 | 1440 | < th | dose independent | sin | 14 | NA |
| 415 | 111.14 | wind | 1 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 429 | 111.16 | wind | 5 | 270 | > th | dose independent | rect. | 12 | 21 |
| 434 | 111.17 | wind | 5 | 270 | < th | dose independent | rect. | 15 | 12 |
| 447 | 111.18 | wind | 3 | 1440 | > th | dose dependent | sin | 15 | NA |
| 497 | 111.23 | wind | 3 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 584 | 111.30 | wind | 5 | 720 | < th | dose independent | rect. | 21 | 16 |
| 610 | 111.31 | wind | 9 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 697 | 111.40 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 716 | 111.40 | wind | 9 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 748 | 111.43 | wind | 9 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 758 | 111.45 | wind | 5 | 720 | < th | dose independent | rect. | 23 | 4 |
| 781 | 111.47 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 10 |
| 791 | 111.47 | wind | 9 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 817 | 111.49 | wind | 9 | 1440 | < th | dose dependent | rect. | 24 | 20 |
| 835 | 111.50 | wind | 9 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 849 | 111.51 | wind | 9 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 855 | 111.52 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 891 | 111.55 | wind | 9 | 1440 | < th | dose dependent | no | NA | NA |
| 975 | 111.60 | wind | 3 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 981 | 111.61 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 3 |